CHANGELOG.md 7.21 KB
Newer Older
Lukas Riedel's avatar
Lukas Riedel committed
1 2
# DORiE Changelog

Lukas Riedel's avatar
Lukas Riedel committed
3

Lukas Riedel's avatar
Lukas Riedel committed
4 5
## Unreleased

Lukas Riedel's avatar
Lukas Riedel committed
6
### Added
Lukas Riedel's avatar
Lukas Riedel committed
7 8 9 10
* [`yaml-cpp`](https://github.com/jbeder/yaml-cpp/) v5.2.0 or greater as
    dependency !81
* Abstract base class for Models !87
* Finite volume solver for passive transport model !93 !88
Lukas Riedel's avatar
Lukas Riedel committed
11
* Grid function container to store transient grid functions !115
Lukas Riedel's avatar
Lukas Riedel committed
12
* Infrastructure for the input of Miller scaling fields. !110
Lukas Riedel's avatar
Lukas Riedel committed
13 14
* Logging framework [`spdlog`](https://github.com/gabime/spdlog) as
    Git submodule for all terminal output !106
Lukas Riedel's avatar
Lukas Riedel committed
15
* Support input of boundary segmentations !119
Lukas Riedel's avatar
Lukas Riedel committed
16
* Reconstruction of continuous fluxes using RT finite elements !105
Lukas Riedel's avatar
Lukas Riedel committed
17
* Custom DG finite element map for simplices based on Pk polynomials !125
Lukas Riedel's avatar
Lukas Riedel committed
18 19
* Initial conditions expressed as analytic functions using
    [muparser](http://beltoforion.de/article.php?a=muparser) !131
Lukas Riedel's avatar
Lukas Riedel committed
20
* Coupling between transient models for water flow and solute transport !96
Lukas Riedel's avatar
Lukas Riedel committed
21
* Initial conditions generated from H5 input data !130
22
* Linear interpolator for initial conditions and scaling fields !145, !156
Lukas Riedel's avatar
Lukas Riedel committed
23
* Parameterizations for hydrodynamic dispersion in solute transport !141
24
* Generic Python VTK file reader !143, !150, !178
25
* Define compile-time settings via CPP macros !144
26 27
* [Google Test](https://github.com/google/googletest) unit test framework
    as Git Submodule !159
28
* Upwinding options for Richards finite volume local operator !161
Lukas Riedel's avatar
Lukas Riedel committed
29
* Cookbook tutorial on infiltration into homogeneous sand !157
30
* GitLab Description Templates for Releases !166
31
* ParaView tutorial for analyzing DORiE output files !173
32 33
* Parameter XML files support tags for version changes !171
* Unit test for Parameter XML file parser !171
34
* CMake option to enable code coverage flags on all targets !172
35
* Steady state initial condition in Richards model !176
36
* Changes to config file parameters listed per version in user docs !175
Lukas Riedel's avatar
Lukas Riedel committed
37 38

### Changed
Lukas Riedel's avatar
Lukas Riedel committed
39 40 41 42 43
* Data structures for storing and accessing parameter information !55
* Split unit tests into separate CI job with coverage reports !98
* Split grid adaptivity process into marking and actual adaptation !91
* Rework VTK adapters and VTK output writer !64
* `RichardsSimulation` now implements the abstract simulation base class !89
44
* Switch to the stable release branch `releases/2.6` of `dune-testtools` !97
Lukas Riedel's avatar
Lukas Riedel committed
45 46 47 48
* Merge Python packages into single new package `dorie` !100
* Move `dorie` Command Line Interface script into Python package !102
* Parameterization data input via YAML and H5 files !82
* Simplify H5 reader to only read datasets !109
49
* Extend run config file to contain data on multiple models !103
Lukas Riedel's avatar
Lukas Riedel committed
50
* DORiE now writes vertex data by default. !128
Lukas Riedel's avatar
Lukas Riedel committed
51
* Switch license from MIT to GPLv3 !135
Lukas Riedel's avatar
Lukas Riedel committed
52
* Specifying scaling field `extensions` and `offset` is now optional !133
Lukas Riedel's avatar
Lukas Riedel committed
53
* Generalized initial condition specification in config file !129
Lukas Riedel's avatar
Lukas Riedel committed
54
* Structure and setup of Sphinx user docs !126
Lukas Riedel's avatar
Lukas Riedel committed
55 56
* Switch to stable `dune-randomfield` release branch !151, !153
* System tests for executing `dorie pfg` module !153
Lukas Riedel's avatar
Lukas Riedel committed
57
* Finite volume solver for the Richards equation !132
58
* Build independent library and executable for each compile-time setting !144
59
* `SimulationBase` unit test now uses Google Test !159
60
* Deploy online documentation for each branch to private server !163
61
* Use YAML (instead of muPhi `.bcdat`) files for specifying BCs !121
62
* Unit and system tests report code coverage separately !172
Lukas Riedel's avatar
Lukas Riedel committed
63

64
### Fixed
Lukas Riedel's avatar
Lukas Riedel committed
65 66
* Allow meta-ini files for unit tests !101
* Solver in `RichardsSimulation` was using the wrong time variable !116
Lukas Riedel's avatar
Lukas Riedel committed
67
* Shape of input datasets was flipped when loading scaling factors !124
68
* `dune_add_system_test` requires target with location after bugfix !165
69
* `make all` would not build the solver application target `dorie` !167
70 71
* Allow Neumman BC to be applied on a different direction other than gravity !121
* Transport model option `dirichletMode` was not working properly !121
72
* Use unsafe loader of PyYAML v5.2 for loading parameter scraper data !177
73

Lukas Riedel's avatar
Lukas Riedel committed
74
### Deprecated
75

Lukas Riedel's avatar
Lukas Riedel committed
76
### Removed
Lukas Riedel's avatar
Lukas Riedel committed
77
* Boundary conditions `evaporation` and `limitedInflux` !120
Lukas Riedel's avatar
Lukas Riedel committed
78

Lukas Riedel's avatar
Lukas Riedel committed
79

Lukas Riedel's avatar
Lukas Riedel committed
80 81 82 83 84 85 86 87 88
## 1.1.1 (2018-08-21)

### Added
* Documentation of Docker images and their usage in the CI/CD pipeline.

### Changed
* Rebuilds of the DUNE environment Docker image are now triggered by setting the
    CI variable `REBUILD_BASE_IMAGE` to a non-empty value. Previously, the
    builds in stage `setup` where triggered by any manual pipeline run.
Lukas Riedel's avatar
Lukas Riedel committed
89
* The test system folder was renamed from `testing` to [`test`](test).
90 91
* File `operator_DG.hh` is renamed  
    [`richards_operator_DG.hh`](dune/dorie/solver/richards_operator_DG.hh)
Lukas Riedel's avatar
Lukas Riedel committed
92

Lukas Riedel's avatar
Lukas Riedel committed
93 94 95 96
### Fixed
* Removed VTK output from `dorie_mass_conservation` executable, which would
    cause the corresponding test to fail if the designated output directory did
    not exist.
Lukas Riedel's avatar
Lukas Riedel committed
97
* Removed CI artifacts of `test` stage from `deploy` jobs.
Lukas Riedel's avatar
Lukas Riedel committed
98 99 100
* Correctly estimate the number of row entries in the matrix backend based on
    the DG discretization and proper static blocking. This can lead to a
    performance improvement for large problems.
Lukas Riedel's avatar
Lukas Riedel committed
101 102 103
* VTK output is now written _before_ the grid is adapted. Previously, the output
    displayed the adapted grid and not the one the solution was computed on.
* Grid adaptation is skipped after computing the final solution.
Lukas Riedel's avatar
Lukas Riedel committed
104 105
* Path to Pipeline artifacts for `test` stage. The artifacts are now correctly
    captured and can be viewed and downloaded from the GitLab web interface.
Lukas Riedel's avatar
Lukas Riedel committed
106 107
* Fix a bug in the boundary condition evaluation where an `end()` iterator
    was dereferenced without error.
Lukas Riedel's avatar
Lukas Riedel committed
108 109
* Re-introduced deployment of the documentation which can now be found online
    at https://dorie-doc.netlify.com/.
Lukas Riedel's avatar
Lukas Riedel committed
110

Lukas Riedel's avatar
Lukas Riedel committed
111

Lukas Riedel's avatar
Lukas Riedel committed
112
## 1.1.0 (2018-07-27)
Lukas Riedel's avatar
Lukas Riedel committed
113

Lukas Riedel's avatar
Lukas Riedel committed
114
### Added
Lukas Riedel's avatar
Lukas Riedel committed
115 116
* DORiE now employs a `SubsamplingVTKWriter` for higher output precision.
    Subsampling levels are controlled via the new key `output.subsamplingLevel`.
Santiago Ospina's avatar
Santiago Ospina committed
117 118 119
* Automatic deployment of `devel` and stable DORiE Docker Images to Docker Hub.
* Automatic update of the DUNE environment Docker Image for `master` builds.
* CI pipeline now also compiles a Debug build with the LLVM Clang compiler.
Lukas Riedel's avatar
Lukas Riedel committed
120
* Add `.gitattributes` for `CHANGELOG.md` to reduce merge conflicts with
Santiago Ospina's avatar
Santiago Ospina committed
121
    `merge=union`.
Lukas Riedel's avatar
Lukas Riedel committed
122
* Public API definition in documentation.
Lukas Riedel's avatar
Lukas Riedel committed
123

Lukas Riedel's avatar
Lukas Riedel committed
124
### Changed
Santiago Ospina's avatar
Santiago Ospina committed
125
* Update code base to *DUNE v2.6*.
Lukas Riedel's avatar
Lukas Riedel committed
126
* Raise software requirements to versions available on Ubuntu 18.04 LTS
Santiago Ospina's avatar
Santiago Ospina committed
127 128
    (Bionic Beaver).
* Switch VTK output from conforming to non-conforming.
Lukas Riedel's avatar
Lukas Riedel committed
129
* Use `multicore` build tag only for `test:parallel` build because the current
Santiago Ospina's avatar
Santiago Ospina committed
130
    GitLab Runner cannot handle the load.
Lukas Riedel's avatar
Lukas Riedel committed
131 132
* Use the `OVLP_AMG_4_DG` linear solver for all computations, including
    sequential ones. This significantly improves performance for large problems.
Lukas Riedel's avatar
Lukas Riedel committed
133
* Change compilation order which reduces RAM usage when compiling in parallel.
Santiago Ospina's avatar
Santiago Ospina committed
134
* Decentralization of the header system so that in most of the header files are 
Santiago Ospina's avatar
Santiago Ospina committed
135
	independent of each other.
Lukas Riedel's avatar
Lukas Riedel committed
136 137 138 139 140

### Deprecated
* `output.subsamplingLevel` is optional and defaults to 0 if not given
    explicitly in the config file. The key will become mandatory in future
    versions.
Lukas Riedel's avatar
Lukas Riedel committed
141

Lukas Riedel's avatar
Lukas Riedel committed
142 143
### Removed
* Complete doxygen documentation from Sphinx docs.
Lukas Riedel's avatar
Lukas Riedel committed
144

Lukas Riedel's avatar
Lukas Riedel committed
145
### Fixed
Lukas Riedel's avatar
Lukas Riedel committed
146 147
* The source code is now compatible to the Clang LLVM compiler.
    DORiE can now be compiled with the onboard compiler on macOS.
Lukas Riedel's avatar
Lukas Riedel committed
148 149
* Fix finite element map used for simplex grids. The old one did not implement
    a discontinuous function space.
Lukas Riedel's avatar
Lukas Riedel committed
150
* Allow warnings on ParMETIS not being available for parallel computations.
Lukas Riedel's avatar
Lukas Riedel committed
151 152


Lukas Riedel's avatar
Lukas Riedel committed
153 154
## 1.0.0 (2018-03-28)

155
First stable version.