merge

cmake/modules/DorieMacros.cmake

@@ -5,10 +5,11 @@ FIND_PACKAGE (HDF5 REQUIRED)
 FIND_PACKAGE (FFTW REQUIRED)
 FIND_PACKAGE (SuperLU REQUIRED)
 FIND_PACKAGE (MPI REQUIRED)
-FIND_PACKAGE (METIS REQUIRED)
-FIND_PACKAGE (ParMETIS REQUIRED)
 FIND_PACKAGE (UG REQUIRED)
 
+FIND_PACKAGE (METIS)
+FIND_PACKAGE (ParMETIS)
+
 include_directories(${FFTW_INCLUDES})
 include_directories(${HDF5_INCLUDE_DIRS})
 

cmake/modules/FindHDF5.cmake

-#.rst:
-# FindHDF5
-# --------
-#
-# Find HDF5, a library for reading and writing self describing array data.
-#
-#
-#
-# This module invokes the HDF5 wrapper compiler that should be installed
-# alongside HDF5.  Depending upon the HDF5 Configuration, the wrapper
-# compiler is called either h5cc or h5pcc.  If this succeeds, the module
-# will then call the compiler with the -show argument to see what flags
-# are used when compiling an HDF5 client application.
-#
-# The module will optionally accept the COMPONENTS argument.  If no
-# COMPONENTS are specified, then the find module will default to finding
-# only the HDF5 C library.  If one or more COMPONENTS are specified, the
-# module will attempt to find the language bindings for the specified
-# components.  The only valid components are C, CXX, Fortran, HL, and
-# Fortran_HL.  If the COMPONENTS argument is not given, the module will
-# attempt to find only the C bindings.
-#
-# On UNIX systems, this module will read the variable
-# HDF5_USE_STATIC_LIBRARIES to determine whether or not to prefer a
-# static link to a dynamic link for HDF5 and all of it's dependencies.
-# To use this feature, make sure that the HDF5_USE_STATIC_LIBRARIES
-# variable is set before the call to find_package.
-#
-# To provide the module with a hint about where to find your HDF5
-# installation, you can set the environment variable HDF5_ROOT.  The
-# Find module will then look in this path when searching for HDF5
-# executables, paths, and libraries.
-#
-# In addition to finding the includes and libraries required to compile
-# an HDF5 client application, this module also makes an effort to find
-# tools that come with the HDF5 distribution that may be useful for
-# regression testing.
-#
-# This module will define the following variables:
-#
-# ::
-#
-#   HDF5_INCLUDE_DIRS - Location of the hdf5 includes
-#   HDF5_INCLUDE_DIR - Location of the hdf5 includes (deprecated)
-#   HDF5_DEFINITIONS - Required compiler definitions for HDF5
-#   HDF5_C_LIBRARIES - Required libraries for the HDF5 C bindings.
-#   HDF5_CXX_LIBRARIES - Required libraries for the HDF5 C++ bindings
-#   HDF5_Fortran_LIBRARIES - Required libraries for the HDF5 Fortran bindings
-#   HDF5_HL_LIBRARIES - Required libraries for the HDF5 high level API
-#   HDF5_Fortran_HL_LIBRARIES - Required libraries for the high level Fortran
-#                               bindings.
-#   HDF5_LIBRARIES - Required libraries for all requested bindings
-#   HDF5_FOUND - true if HDF5 was found on the system
-#   HDF5_VERSION - HDF5 version in format Major.Minor.Release
-#   HDF5_LIBRARY_DIRS - the full set of library directories
-#   HDF5_IS_PARALLEL - Whether or not HDF5 was found with parallel IO support
-#   HDF5_C_COMPILER_EXECUTABLE - the path to the HDF5 C wrapper compiler
-#   HDF5_CXX_COMPILER_EXECUTABLE - the path to the HDF5 C++ wrapper compiler
-#   HDF5_Fortran_COMPILER_EXECUTABLE - the path to the HDF5 Fortran wrapper compiler
-#   HDF5_DIFF_EXECUTABLE - the path to the HDF5 dataset comparison tool
-
-#=============================================================================
-# Copyright 2015 Axel Huebl, Helmholtz-Zentrum Dresden - Rossendorf
-# Copyright 2009 Kitware, Inc.
-#
-# Distributed under the OSI-approved BSD License (the "License");
-# see accompanying file Copyright.txt for details.
-#
-# This software is distributed WITHOUT ANY WARRANTY; without even the
-# implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the License for more information.
-#=============================================================================
-# (To distribute this file outside of CMake, substitute the full
-#  License text for the above reference.)
-
-# This module is maintained by Will Dicharry <wdicharry@stellarscience.com>.
-
-include(${CMAKE_ROOT}/Modules/SelectLibraryConfigurations.cmake)
-include(${CMAKE_ROOT}/Modules/FindPackageHandleStandardArgs.cmake)
-
-# List of the valid HDF5 components
-set( HDF5_VALID_COMPONENTS
-    C
-    CXX
-    Fortran
-    HL
-    Fortran_HL
-)
-
-# Validate the list of find components.
-if( NOT HDF5_FIND_COMPONENTS )
-    set( HDF5_LANGUAGE_BINDINGS "C" )
-else()
-    # add the extra specified components, ensuring that they are valid.
-    foreach( component ${HDF5_FIND_COMPONENTS} )
-        list( FIND HDF5_VALID_COMPONENTS ${component} component_location )
-        if( ${component_location} EQUAL -1 )
-            message( FATAL_ERROR
-                "\"${component}\" is not a valid HDF5 component." )
-        else()
-            list( APPEND HDF5_LANGUAGE_BINDINGS ${component} )
-        endif()
-    endforeach()
-endif()
-
-# try to find the HDF5 wrapper compilers
-find_program( HDF5_C_COMPILER_EXECUTABLE
-    NAMES hp5cc #h5cc
-    HINTS ENV HDF5_ROOT
-    PATH_SUFFIXES bin Bin
-    DOC "HDF5 Wrapper compiler.  Used only to detect HDF5 compile flags." )
-mark_as_advanced( HDF5_C_COMPILER_EXECUTABLE )
-
-find_program( HDF5_CXX_COMPILER_EXECUTABLE
-    NAMES h5c++ h5pc++
-    HINTS ENV HDF5_ROOT
-    PATH_SUFFIXES bin Bin
-    DOC "HDF5 C++ Wrapper compiler.  Used only to detect HDF5 compile flags." )
-mark_as_advanced( HDF5_CXX_COMPILER_EXECUTABLE )
-
-find_program( HDF5_Fortran_COMPILER_EXECUTABLE
-    NAMES h5fc h5pfc
-    HINTS ENV HDF5_ROOT
-    PATH_SUFFIXES bin Bin
-    DOC "HDF5 Fortran Wrapper compiler.  Used only to detect HDF5 compile flags." )
-mark_as_advanced( HDF5_Fortran_COMPILER_EXECUTABLE )
-
-find_program( HDF5_DIFF_EXECUTABLE
-    NAMES h5diff
-    HINTS ENV HDF5_ROOT
-    PATH_SUFFIXES bin Bin
-    DOC "HDF5 file differencing tool." )
-mark_as_advanced( HDF5_DIFF_EXECUTABLE )
-
-# Invoke the HDF5 wrapper compiler.  The compiler return value is stored to the
-# return_value argument, the text output is stored to the output variable.
-macro( _HDF5_invoke_compiler language output return_value )
-    if( HDF5_${language}_COMPILER_EXECUTABLE )
-        exec_program( ${HDF5_${language}_COMPILER_EXECUTABLE}
-            ARGS -show
-            OUTPUT_VARIABLE ${output}
-            RETURN_VALUE ${return_value}
-        )
-        if( ${${return_value}} EQUAL 0 )
-            # do nothing
-        else()
-            message( STATUS
-              "Unable to determine HDF5 ${language} flags from HDF5 wrapper." )
-        endif()
-    endif()
-endmacro()
-
-# Parse a compile line for definitions, includes, library paths, and libraries.
-macro( _HDF5_parse_compile_line
-    compile_line_var
-    include_paths
-    definitions
-    library_paths
-    libraries )
-
-    # Match the include paths
-    string( REGEX MATCHALL "-I([^\" ]+)" include_path_flags
-        "${${compile_line_var}}"
-    )
-    foreach( IPATH ${include_path_flags} )
-        string( REGEX REPLACE "^-I" "" IPATH ${IPATH} )
-        string( REPLACE "//" "/" IPATH ${IPATH} )
-        list( APPEND ${include_paths} ${IPATH} )
-    endforeach()
-
-    # Match the definitions
-    string( REGEX MATCHALL "-D[^ ]*" definition_flags "${${compile_line_var}}" )
-    foreach( DEF ${definition_flags} )
-        list( APPEND ${definitions} ${DEF} )
-    endforeach()
-
-    # Match the library paths
-    string( REGEX MATCHALL "-L([^\" ]+|\"[^\"]+\")" library_path_flags
-        "${${compile_line_var}}"
-    )
-
-    foreach( LPATH ${library_path_flags} )
-        string( REGEX REPLACE "^-L" "" LPATH ${LPATH} )
-        string( REPLACE "//" "/" LPATH ${LPATH} )
-        list( APPEND ${library_paths} ${LPATH} )
-    endforeach()
-
-    # now search for the library names specified in the compile line (match -l...)
-    # match only -l's preceded by a space or comma
-    # this is to exclude directory names like xxx-linux/
-    string( REGEX MATCHALL "[, ]-l([^\", ]+)" library_name_flags
-        "${${compile_line_var}}" )
-    # strip the -l from all of the library flags and add to the search list
-    foreach( LIB ${library_name_flags} )
-        string( REGEX REPLACE "^[, ]-l" "" LIB ${LIB} )
-        list( APPEND ${libraries} ${LIB} )
-    endforeach()
-endmacro()
-
-# Try to find HDF5 using an installed hdf5-config.cmake
-if( NOT HDF5_FOUND )
-    find_package( HDF5 QUIET NO_MODULE )
-    if( HDF5_FOUND )
-        set( HDF5_INCLUDE_DIRS ${HDF5_INCLUDE_DIR} )
-        set( HDF5_LIBRARIES )
-        set( HDF5_C_TARGET hdf5 )
-        set( HDF5_CXX_TARGET hdf5_cpp )
-        set( HDF5_HL_TARGET hdf5_hl )
-        set( HDF5_Fortran_TARGET hdf5_fortran )
-        set( HDF5_Fortran_HL_TARGET hdf5_hl_fortran )
-        foreach( _component ${HDF5_LANGUAGE_BINDINGS} )
-            list( FIND HDF5_VALID_COMPONENTS ${_component} _component_location )
-            get_target_property( _comp_location ${HDF5_${_component}_TARGET} LOCATION )
-            if( _comp_location )
-                set( HDF5_${_component}_LIBRARY ${_comp_location} CACHE PATH
-                    "HDF5 ${_component} library" )
-                mark_as_advanced( HDF5_${_component}_LIBRARY )
-                list( APPEND HDF5_LIBRARIES ${HDF5_${_component}_LIBRARY} )
-            endif()
-        endforeach()
-    endif()
-endif()
-
-if( NOT HDF5_FOUND )
-    _HDF5_invoke_compiler( C HDF5_C_COMPILE_LINE HDF5_C_RETURN_VALUE )
-    _HDF5_invoke_compiler( CXX HDF5_CXX_COMPILE_LINE HDF5_CXX_RETURN_VALUE )
-    _HDF5_invoke_compiler( Fortran HDF5_Fortran_COMPILE_LINE HDF5_Fortran_RETURN_VALUE )
-
-    # seed the initial lists of libraries to find with items we know we need
-    set( HDF5_C_LIBRARY_NAMES_INIT hdf5 )
-    set( HDF5_HL_LIBRARY_NAMES_INIT hdf5_hl ${HDF5_C_LIBRARY_NAMES_INIT} )
-    set( HDF5_CXX_LIBRARY_NAMES_INIT hdf5_cpp ${HDF5_C_LIBRARY_NAMES_INIT} )
-    set( HDF5_Fortran_LIBRARY_NAMES_INIT hdf5_fortran
-        ${HDF5_C_LIBRARY_NAMES_INIT} )
-    set( HDF5_Fortran_HL_LIBRARY_NAMES_INIT hdf5hl_fortran
-        ${HDF5_Fortran_LIBRARY_NAMES_INIT} )
-
-    foreach( LANGUAGE ${HDF5_LANGUAGE_BINDINGS} )
-        if( HDF5_${LANGUAGE}_COMPILE_LINE )
-            _HDF5_parse_compile_line( HDF5_${LANGUAGE}_COMPILE_LINE
-                HDF5_${LANGUAGE}_INCLUDE_FLAGS
-                HDF5_${LANGUAGE}_DEFINITIONS
-                HDF5_${LANGUAGE}_LIBRARY_DIRS
-                HDF5_${LANGUAGE}_LIBRARY_NAMES
-            )
-
-            # take a guess that the includes may be in the 'include' sibling
-            # directory of a library directory.
-            foreach( dir ${HDF5_${LANGUAGE}_LIBRARY_DIRS} )
-                list( APPEND HDF5_${LANGUAGE}_INCLUDE_FLAGS ${dir}/../include )
-            endforeach()
-        endif()
-
-        # set the definitions for the language bindings.
-        list( APPEND HDF5_DEFINITIONS ${HDF5_${LANGUAGE}_DEFINITIONS} )
-
-        # find the HDF5 include directories
-        if(${LANGUAGE} MATCHES "Fortran")
-            set(HDF5_INCLUDE_FILENAME hdf5.mod)
-        else()
-            set(HDF5_INCLUDE_FILENAME hdf5.h)
-        endif()
-
-        find_path( HDF5_${LANGUAGE}_INCLUDE_DIR ${HDF5_INCLUDE_FILENAME}
-            HINTS
-                ${HDF5_${LANGUAGE}_INCLUDE_FLAGS}
-                ENV
-                    HDF5_ROOT
-            PATHS
-                $ENV{HOME}/.local/include
-            PATH_SUFFIXES
-                include
-                Include
-        )
-        mark_as_advanced( HDF5_${LANGUAGE}_INCLUDE_DIR )
-        list( APPEND HDF5_INCLUDE_DIRS ${HDF5_${LANGUAGE}_INCLUDE_DIR} )
-
-        set( HDF5_${LANGUAGE}_LIBRARY_NAMES
-            ${HDF5_${LANGUAGE}_LIBRARY_NAMES_INIT}
-            ${HDF5_${LANGUAGE}_LIBRARY_NAMES} )
-
-        # find the HDF5 libraries
-        foreach( LIB ${HDF5_${LANGUAGE}_LIBRARY_NAMES} )
-            if( UNIX AND HDF5_USE_STATIC_LIBRARIES )
-                # According to bug 1643 on the CMake bug tracker, this is the
-                # preferred method for searching for a static library.
-                # See http://www.cmake.org/Bug/view.php?id=1643.  We search
-                # first for the full static library name, but fall back to a
-                # generic search on the name if the static search fails.
-                set( THIS_LIBRARY_SEARCH_DEBUG lib${LIB}d.a ${LIB}d )
-                set( THIS_LIBRARY_SEARCH_RELEASE lib${LIB}.a ${LIB} )
-            else()
-                set( THIS_LIBRARY_SEARCH_DEBUG ${LIB}d )
-                set( THIS_LIBRARY_SEARCH_RELEASE ${LIB} )
-            endif()
-            find_library( HDF5_${LIB}_LIBRARY_DEBUG
-                NAMES ${THIS_LIBRARY_SEARCH_DEBUG}
-                HINTS ${HDF5_${LANGUAGE}_LIBRARY_DIRS}
-                ENV HDF5_ROOT
-                PATH_SUFFIXES lib Lib )
-            find_library( HDF5_${LIB}_LIBRARY_RELEASE
-                NAMES ${THIS_LIBRARY_SEARCH_RELEASE}
-                HINTS ${HDF5_${LANGUAGE}_LIBRARY_DIRS}
-                ENV HDF5_ROOT
-                PATH_SUFFIXES lib Lib )
-            select_library_configurations( HDF5_${LIB} )
-            list(APPEND HDF5_${LANGUAGE}_LIBRARIES ${HDF5_${LIB}_LIBRARY})
-        endforeach()
-        list( APPEND HDF5_LIBRARY_DIRS ${HDF5_${LANGUAGE}_LIBRARY_DIRS} )
-
-        # Append the libraries for this language binding to the list of all
-        # required libraries.
-        list(APPEND HDF5_LIBRARIES ${HDF5_${LANGUAGE}_LIBRARIES})
-    endforeach()
-
-    # We may have picked up some duplicates in various lists during the above
-    # process for the language bindings (both the C and C++ bindings depend on
-    # libz for example).  Remove the duplicates. It appears that the default
-    # CMake behavior is to remove duplicates from the end of a list. However,
-    # for link lines, this is incorrect since unresolved symbols are searched
-    # for down the link line. Therefore, we reverse the list, remove the
-    # duplicates, and then reverse it again to get the duplicates removed from
-    # the beginning.
-    macro( _remove_duplicates_from_beginning _list_name )
-        list( REVERSE ${_list_name} )
-        list( REMOVE_DUPLICATES ${_list_name} )
-        list( REVERSE ${_list_name} )
-    endmacro()
-
-    if( HDF5_INCLUDE_DIRS )
-        _remove_duplicates_from_beginning( HDF5_INCLUDE_DIRS )
-    endif()
-    if( HDF5_LIBRARY_DIRS )
-        _remove_duplicates_from_beginning( HDF5_LIBRARY_DIRS )
-    endif()
-
-    # If the HDF5 include directory was found, open H5pubconf.h to determine if
-    # HDF5 was compiled with parallel IO support
-    set( HDF5_IS_PARALLEL FALSE )
-    set( HDF5_VERSION "" )
-    foreach( _dir IN LISTS HDF5_INCLUDE_DIRS )
-      foreach(_hdr "${_dir}/H5pubconf.h" "${_dir}/H5pubconf-64.h" "${_dir}/H5pubconf-32.h")
-        if( EXISTS "${_hdr}" )
-            file( STRINGS "${_hdr}"
-                HDF5_HAVE_PARALLEL_DEFINE
-                REGEX "HAVE_PARALLEL 1" )
-            if( HDF5_HAVE_PARALLEL_DEFINE )
-                set( HDF5_IS_PARALLEL TRUE )
-            endif()
-            unset(HDF5_HAVE_PARALLEL_DEFINE)
-
-            file( STRINGS "${_hdr}"
-                HDF5_VERSION_DEFINE
-                REGEX "^[ \t]*#[ \t]*define[ \t]+H5_VERSION[ \t]+" )
-            if( "${HDF5_VERSION_DEFINE}" MATCHES
-                "H5_VERSION[ \t]+\"([0-9]+\\.[0-9]+\\.[0-9]+).*\"" )
-                set( HDF5_VERSION "${CMAKE_MATCH_1}" )
-            endif()
-            unset(HDF5_VERSION_DEFINE)
-        endif()
-      endforeach()
-    endforeach()
-    set( HDF5_IS_PARALLEL ${HDF5_IS_PARALLEL} CACHE BOOL
-        "HDF5 library compiled with parallel IO support" )
-    mark_as_advanced( HDF5_IS_PARALLEL )
-
-    # For backwards compatibility we set HDF5_INCLUDE_DIR to the value of
-    # HDF5_INCLUDE_DIRS
-    if( HDF5_INCLUDE_DIRS )
-        set( HDF5_INCLUDE_DIR "${HDF5_INCLUDE_DIRS}" )
-    endif()
-
-endif()
-
-find_package_handle_standard_args( HDF5
-    REQUIRED_VARS HDF5_LIBRARIES HDF5_INCLUDE_DIRS
-    VERSION_VAR   HDF5_VERSION
-)
-

cmake/modules/InstallPythonPackage.cmake

-# This cmake module provides macros that install python packages into the virtualenv
-# that is shared by all dune modules that depend on dune-python.
-#
-# .. cmake_function:: dune_install_python_package
-#
-#    .. cmake_param:: PATH
-#       :required:
-#       :single:
-#
-#       Relative path to the given python package source code.
-#
-#    .. cmake_param:: MAJOR_VERSION
-#       :single:
-#
-#       Set to "2" or "3" if your python package only works with
-#       python2 or python3. This will restrict the installation process to that
-#       python version.
-#
-#    .. cmake_param:: NO_PIP
-#       :option:
-#
-#       Instead of :code:`pip -e`, `python setup.py develop` will be used as
-#       the installation command.
-#
-#    .. cmake_param:: NO_EDIT
-#       :option:
-#
-#       Will drop :code:`pip`s :code:`-e` option (or switch :code:`develop` to :code:`install`).
-#       Only use this option if your package is incompatible with :code:`-e`.
-#
-#    Installs the python package located at path into the virtualenv used by dune-python
-#    The package at the given location is expected to be a pip installable package.
-#    Also marks the given python package for global installation during :code:`make install`.
-#    By default, the python package will then be installed into the system-wide site-packages
-#    location. If you do not want to install it there, or you do not have permission to,
-#    you may optionally set :ref:`DUNE_PYTHON_INSTALL_USER` to a username. The
-#    packages will then be installed in the home directory of that user.
-#    This is done through pips :code:`--user` option. Installation in arbitrary locations is not
-#    supported to minimize :code:`PYTHONPATH` issues.
-#
-# .. cmake_variable:: DUNE_PYTHON_INSTALL_USER
-#
-#    dune-python only supports two ways of globally installing python packages during
-#    :code:`make install`:
-#
-#    * Into standard system paths (default)
-#    * Into the standard python path of a users home directory (through :code:`pip --user`)
-#
-#    Set this variable to a username to use the latter.
-#
-
-include(CheckPythonPackage)
-
-function(dorie_install_python_package)
-  # Parse Arguments
-  set(OPTION NO_PIP NO_EDIT QUIET)
-  set(SINGLE PATH MAJOR_VERSION)
-  set(MULTI)
-  include(CMakeParseArguments)
-  cmake_parse_arguments(PYINST "${OPTION}" "${SINGLE}" "${MULTI}" ${ARGN})
-  if(PYINST_UNPARSED_ARGUMENTS)
-    message(WARNING "Unparsed arguments in dune_install_python_package: This often indicates typos!")
-  endif()
-
-  # apply defaults
-  if(NOT PYINST_MAJOR_VERSION)
-    set(PYINST_MAJOR_VERSION 2 3)
-  endif()
-
-  # check for available pip packages
-  check_python_package(PACKAGE pip
-                       INTERPRETER ${PYTHON2_EXECUTABLE}
-                       RESULT PIP2_FOUND)
-  check_python_package(PACKAGE pip
-                       INTERPRETER ${PYTHON3_EXECUTABLE}
-                       RESULT PIP3_FOUND)
-
-  # Construct the installation command strings from the given options
-  if(PYINST_NO_PIP)
-    if(PYINST_NO_EDIT)
-      set(INST_COMMAND install)
-    else()
-      set(INST_COMMAND develop)
-    endif()
-    set(VENV_INSTALL_COMMAND python setup.py ${INST_COMMAND})
-  else()
-    set(EDIT_OPTION)
-    if(NOT PYINST_NO_EDIT)
-      set(EDIT_OPTION -e)
-    endif()
-    if(PYINST_QUIET)
-      set(EDIT_OPTION "-q ${EDIT_OPTION}")
-    endif()
-    set(VENV_INSTALL_COMMAND python -m pip install ${EDIT_OPTION} .)
-  endif()
-
-  # Construct the interpreter options for global installation
-  if(PYINST_NO_PIP)
-    set(SYSTEM_INSTALL_OPTIONS setup.py install)
-    if(DUNE_PYTHON_INSTALL_USER)
-      message("Error message: Incompatible options - NO_PIP and DUNE_PYTHON_INSTALL_USER")
-    endif()
-  else()
-    set(USER_STRING "")
-    if(DUNE_PYTHON_INSTALL_USER)
-      set(USER_STRING --user ${DUNE_PYTHON_INSTALL_USER})
-    endif()
-    set(SYSTEM_INSTALL_OPTIONS -m pip install ${USER_STRING} .)
-  endif()
-
-  # iterate over the given interpreters
-  foreach(version ${PYINST_MAJOR_VERSION})
-    # install the package into the virtual env
-    execute_process(COMMAND ${CMAKE_BINARY_DIR}/dune-env-${version} ${VENV_INSTALL_COMMAND}
-                    WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/${PYINST_PATH})
-
-    # define a rule on how to install the package during make install
-    if(PIP${version}_FOUND)
-      install(CODE "execute_process(COMMAND ${PYTHON${version}_EXECUTABLE} ${SYSTEM_INSTALL_OPTIONS}
-                                    WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/${PYINST_PATH})
-                   ")
-    else()
-      install(CODE "message(FATAL_ERROR \"You need the python${version} package pip installed on the host system to install a module that contains python code\")")
-    endif()
-  endforeach()
-endfunction()

python/CMakeLists.txt

 function(install_python_package curdir packagelist)
     message(STATUS "Installing python package dorie.${curdir}")
-    dorie_install_python_package(PATH ${curdir} QUIET)
+    dune_install_python_package(PATH ${curdir} ADDITIONAL_PIP_PARAMS -r ${CMAKE_CURRENT_SOURCE_DIR}/${curdir}/requirements.txt -q)
     set(${packagelist} ${${packagelist}} ${CMAKE_CURRENT_SOURCE_DIR}/${curdir} PARENT_SCOPE)
 endfunction()
 

python/parscraper/dorie/parscraper/match_parameters.py

+from __future__ import absolute_import
+
 import os
 from warnings import warn
 

python/parscraper/dorie/parscraper/readers/xml.py

+from __future__ import absolute_import
+
 import xml.etree.ElementTree as ET
 from warnings import warn
 from collections import OrderedDict

python/parscraper/dorie/parscraper/writers/html.py

+
+
+from __future__ import unicode_literals
+
 import datetime
 import os
 import re
@@ -5,7 +9,7 @@ import re
 from dorie.utilities.check_path import check_path
 from dorie.parscraper.parameter import Parameter
 
-def write(parameters,out,path_format,**kwargs):
+def write(parameters,out,path_base,*args,**kwargs):
     """
     Writes the contents of the ``parameters`` input dict to a .html file. The output is
     structured as
@@ -21,9 +25,8 @@ def write(parameters,out,path_format,**kwargs):
     :param dict parameters: dict with categories as keys and iterables of :class:`dorie.parscraper.parameter.Parameter` \
     instances as values.
     :param str out: Path to the output file. Must be writable.
-    :param str path_format: Format string pointing to the source files. \
-    Needed for creation of working links to the files. May contain \{filename\} and \{line\} that are substituted \
-    by the file name and line number, respectively.
+    :param str path_base: Base path to the source files. Needed for creation of working links \
+    to the files.
     :param str css: Path to a CSS file containing the styling of the HTML output. Is \
     included into the HTML output (inline). Optional.
 
@@ -32,7 +35,7 @@ def write(parameters,out,path_format,**kwargs):
     # DEFINE SOME PROPERTIES
     title = "DORiE parameter cheat sheet"
     headings = ["Parameter","Definition","Possible values","Default","Queried at"]
-    table_content = lambda p: (p.key,p.definition,p.values,p.suggestion,_sources(p,path_format))
+    table_content = lambda p: (p.key,p.definition,p.values,p.suggestion,_sources(p,path_base))
     widths = [13, 40, 17, 10, 20] # relative column widths
 
     # WRITE HTML CODE TO OUTPUT
@@ -176,7 +179,7 @@ def _parse_markdown(text):
     return text
 
 
-def _sources(p,path_format):
+def _sources(p,path_base):
     """
     Assembles the cell text for the sources of a parameter. Since the
     Parameter._sources attribute is a list of tuples, we need to parse this
@@ -186,14 +189,12 @@ def _sources(p,path_format):
@@ -186,14 +189,1