Merge branch '46-rework-system-tests'

Resolve "Rework system tests"

See merge request !29

Closes #46

.gitlab-ci.yml

@@ -3,6 +3,11 @@ image: dorie/dune-env:2.5.1
 variables:
   DUNE_CONTROL_PATH: /opt/dune:$CI_PROJECT_DIR
   DUNECONTROL: ./dune-common/bin/dunecontrol
+  CMAKE_FLAGS:
+    -DDUNE_PYTHON_VIRTUALENV_SETUP=True
+    -DDUNE_PYTHON_ALLOW_GET_PIP=True
+  MAKE_FLAGS:
+    -j 2
 
 before_script:
   - cd /opt/dune
@@ -10,91 +15,128 @@ before_script:
 stages:
   - build
   - test
-  - deploy
 
 build:main:
   stage: build
-  tags:
-    - demeter
   script:
-    - CMAKE_FLAGS="-DDUNE_PYTHON_VIRTUALENV_SETUP=True -DDUNE_PYTHON_ALLOW_GET_PIP=True" MAKE_FLAGS="-j 2" $DUNECONTROL --only=dorie all
-    - $DUNECONTROL --only=dorie make build_tests
+    - CMAKE_FLAGS="$CMAKE_FLAGS"
+      MAKE_FLAGS="$MAKE_FLAGS"
+      $DUNECONTROL --only=dorie all
+    - MAKE_FLAGS="$MAKE_FLAGS"
+      $DUNECONTROL --only=dorie make build_tests
   artifacts:
     name: "$CI_JOB_NAME"
     paths:
       - $CI_PROJECT_DIR/build-cmake
-    expire_in: 3 days
+    expire_in: 1 day
 
 build:update_dune:
   stage: build
-  tags:
-    - demeter
   only:
     - master
   script:
     - $DUNECONTROL update
     - $DUNECONTROL exec "rm -rf build-cmake"
-    - CMAKE_FLAGS="-DDUNE_PYTHON_VIRTUALENV_SETUP=True -DDUNE_PYTHON_ALLOW_GET_PIP=True" MAKE_FLAGS="-j 2" $DUNECONTROL --module=dorie all
-    - $DUNECONTROL --only=dorie make build_tests
+    - CMAKE_FLAGS="$CMAKE_FLAGS"
+      MAKE_FLAGS="$MAKE_FLAGS"
+      $DUNECONTROL --module=dorie all
+    - MAKE_FLAGS="$MAKE_FLAGS"
+      $DUNECONTROL --only=dorie make build_tests
   artifacts:
     name: "$CI_JOB_NAME"
     paths:
       - $CI_PROJECT_DIR/build-cmake
-    expire_in: 3 days
+    expire_in: 1 day
 
 build:debug:
   stage: build
-  tags:
-    - demeter
+  allow_failure: true
   script:
-    - CMAKE_FLAGS="-DCMAKE_BUILD_TYPE=Debug -DDUNE_PYTHON_VIRTUALENV_SETUP=True -DDUNE_PYTHON_ALLOW_GET_PIP=True" MAKE_FLAGS="-j 2" $DUNECONTROL --only=dorie all
-    - $DUNECONTROL --only=dorie make build_tests
+    - CMAKE_FLAGS="
+        $CMAKE_FLAGS
+        -DCMAKE_BUILD_TYPE=Debug 
+        -DCMAKE_CXX_FLAGS_DEBUG='-Werror'"
+      MAKE_FLAGS="$MAKE_FLAGS"
+      $DUNECONTROL --only=dorie all
+    - MAKE_FLAGS="$MAKE_FLAGS"
+      $DUNECONTROL --only=dorie make build_tests
 
-test:main:
+test:exec_cmds:
+  stage: test
+  dependencies:
+    - build:main
+  script:
+    - $DUNECONTROL --only=dorie configure
+    - $DUNECONTROL --only=dorie make test_dorie_exec
+  artifacts:
+    name: "$CI_JOB_NAME"
+    paths:
+      - $CI_PROJECT_DIR/build-cmake/Testing
+    expire_in: 1 day
+
+test:ode:
   stage: test
-  tags:
-    - demeter
   dependencies:
     - build:main
-  allow_failure: true
   script:
     - $DUNECONTROL --only=dorie configure
-    - ARGS="--output-on-failure -j 2" $DUNECONTROL --only=dorie make test
+    - $DUNECONTROL --only=dorie make test_run_ode
   artifacts:
     name: "$CI_JOB_NAME"
     paths:
       - $CI_PROJECT_DIR/build-cmake/Testing
-    expire_in: 1 week
+    expire_in: 1 day
 
-test:update_dune:
+test:ode-update_dune:
   stage: test
-  tags:
-    - demeter
   dependencies:
     - build:update_dune
   only:
     - master
-  allow_failure: true
   script:
     - $DUNECONTROL --only=dorie configure
-    - ARGS="--output-on-failure -j 2" $DUNECONTROL --only=dorie make test
+    - $DUNECONTROL --only=dorie make test_run_ode
   artifacts:
     name: "$CI_JOB_NAME"
     paths:
       - $CI_PROJECT_DIR/build-cmake/Testing
-    expire_in: 1 week
+    expire_in: 1 day
 
-deploy:build_docs:
-  stage: deploy
-  tags:
-    - demeter
+test:parallel:
+  stage: test
   dependencies:
     - build:main
   script:
     - $DUNECONTROL --only=dorie configure
-    - $DUNECONTROL --only=dorie make doc
+    - $DUNECONTROL --only=dorie make test_run_parallel
   artifacts:
     name: "$CI_JOB_NAME"
     paths:
-      - $CI_PROJECT_DIR/build-cmake/doc
-    expire_in: 1 week
\ No newline at end of file
+      - $CI_PROJECT_DIR/build-cmake/Testing
+    expire_in: 1 day
+
+test:reference:
+  stage: test
+  dependencies:
+    - build:main
+  script:
+    - $DUNECONTROL --only=dorie configure
+    - $DUNECONTROL --only=dorie make test_run_ref
+  artifacts:
+    name: "$CI_JOB_NAME"
+    paths:
+      - $CI_PROJECT_DIR/build-cmake/Testing
+    expire_in: 1 day
+
+test:mass_conserve:
+  stage: test
+  dependencies:
+    - build:main
+  script:
+    - $DUNECONTROL --only=dorie configure
+    - $DUNECONTROL --only=dorie make test_mass_conservation
+  artifacts:
+    name: "$CI_JOB_NAME"
+    paths:
+      - $CI_PROJECT_DIR/build-cmake/Testing
+    expire_in: 1 day
\ No newline at end of file

CMakeLists.txt

@@ -10,7 +10,12 @@ string(TOUPPER ${CMAKE_BUILD_TYPE} CMAKE_BUILD_TYPE_UPPER)
 if(CMAKE_BUILD_TYPE_UPPER MATCHES DEBUG)
 	set(CMAKE_VERBOSE_MAKEFILE ON)
 endif()
-set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -Wall -Werror")
+
+# option to change DG scheme via config file
+option(EXPERIMENTAL_DG_FEATURES
+  "Enable experimental DG settings through the config file"
+  OFF
+)
 
 # option to change DG scheme via config file
 option(EXPERIMENTAL_DG_FEATURES
@@ -41,6 +46,7 @@ dune_require_cxx_standard(MODULE "dorie" VERSION 14)
 # add subdirectories
 add_subdirectory("bin")
 add_subdirectory("m4")
+add_subdirectory("cmake/modules")
 add_subdirectory("dune")
 add_subdirectory("lib")
 add_subdirectory("python")
@@ -48,7 +54,6 @@ add_subdirectory("doc")
 if(dune-testtools_FOUND)
     add_subdirectory("testing")
 endif()
-add_subdirectory("cmake/modules")
                   
 # finalize the dune project, e.g. generating config.h etc.
 finalize_dune_project(GENERATE_CONFIG_H_CMAKE)

python/testtools/dorie/testtools/dorie_run/muphi.py

@@ -54,4 +54,5 @@ def evaluate(iniinfo,runtime):
 
     l2 = np.sqrt(np.mean(np.square(diff))) # RMS error
     print("L2: {:.2e}".format(l2))
-    return bool(l2 < 5E-3)
+    meantol = float(iniinfo['_reference.meantol'])
+    return bool(l2 < meantol)

python/utilities/dorie/utilities/fuzzy_compare_grid.py

@@ -75,7 +75,7 @@ def _compare_max_norm(residuals, atol, rtol):
 def _compare_l2_norm(residuals, grid, abstol):
     passed = True
     for var, res in residuals.items():
-        l2 = np.sqrt(grid.integrate(res**2) / grid.integrate(1))
+        l2 = np.sqrt(np.sum(grid.integrate(res**2) / grid.integrate(1)))
         if np.all(l2 > abstol):
             print("Data in variable {} does not match".format(var))
             print("\tL2 error: {}".format(l2))
@@ -83,7 +83,7 @@ def _compare_l2_norm(residuals, grid, abstol):
     return passed
 
 
-def compare(grid1,grid2,abstol=1E-6,reltol=1E-3,strict=False):
+def compare(grid1,grid2,abstol=1E-7,reltol=1E-7,strict=False):
     if not isinstance(grid1,BaseGrid) or not isinstance(grid2,BaseGrid):
         raise TypeError("Inputs must be of type BaseGrid (got: {} and {})"\
                         .format(type(grid1),type(grid2)))

testing/CMakeLists.txt

 message(STATUS "Handling system tests")
+MESSAGE(STATUS "DUNE Libraries: ${DUNE_LIBS}")
 
 function(dorie_add_system_test target metaini)
 	configure_file(${metaini}.in ${CMAKE_CURRENT_LIST_DIR}/${metaini})
@@ -9,54 +10,79 @@ function(dorie_add_system_test_dependency test1 test2)
 	set_tests_properties(${test1} PROPERTIES DEPENDS ${test2})
 endfunction()
 
-# dorie run
-dorie_add_system_test(dorie ode_homogeneous_1.mini)
-dorie_add_system_test(dorie ode_homogeneous_2.mini)
-dorie_add_system_test(dorie ode_homogeneous_3.mini)
+# dorie run: ODE tests
+dorie_add_system_test(dorie ode_homogeneous_sand.mini)
+dorie_add_system_test(dorie ode_homogeneous_silt.mini)
+dorie_add_system_test(dorie ode_layered.mini)
+dorie_add_system_test(dorie ode_linear_interpolator.mini)
 
-dorie_add_system_test(dorie ode_heterogeneous_1.mini)
-dorie_add_system_test(dorie ode_heterogeneous_2.mini)
-dorie_add_system_test(dorie ode_heterogeneous_3.mini)
+# add target for ODE tests
+add_custom_target(test_run_ode
+    COMMAND ctest --output-on-failure --tests-regex ^dorie_ode.+$)
 
-dorie_add_system_test(dorie ode_evaporation.mini)
-dorie_add_system_test(dorie ode_linear_interpolator.mini)
+# dorie run: Reference tests
+dorie_add_system_test(dorie-rfg parfield_muphi.mini)
 dorie_add_system_test(dorie muphi.mini)
-dorie_add_system_test_dependency(dorie_muphi dorie-rfg_muphi_pfg)
-dorie_add_system_test(dorie reference_2d.mini)
-dorie_add_system_test(dorie reference_3d.mini)
-dorie_add_system_test(dorie reference_evaporation.mini)
-dorie_add_system_test(dorie reference_interpolators.mini)
+set_tests_properties(dorie-rfg_ref_muphi_pfg PROPERTIES FIXTURES_SETUP muphi_ref)
+set_tests_properties(dorie_ref_muphi PROPERTIES FIXTURES_REQUIRED muphi_ref)
+
+add_custom_target(test_run_ref
+	COMMAND ctest --output-on-failure --tests-regex ^.+_ref_.+$
+)
+
+# dorie_add_system_test(dorie reference_2d.mini)
+# dorie_add_system_test(dorie reference_3d.mini)
+# dorie_add_system_test(dorie reference_evaporation.mini)
+# dorie_add_system_test(dorie reference_interpolators.mini)
 
 # dorie in parallel
 dorie_add_system_test(dorie parallel_reference.mini)
 dorie_add_system_test(dorie parallel_reference_compare.mini)
-dorie_add_system_test_dependency(dorie_parallel_reference_compare_0000 dorie_parallel_reference_0000)
-dorie_add_system_test_dependency(dorie_parallel_reference_compare_0001 dorie_parallel_reference_0000)
-dorie_add_system_test_dependency(dorie_parallel_reference_compare_0002 dorie_parallel_reference_0001)
-dorie_add_system_test_dependency(dorie_parallel_reference_compare_0003 dorie_parallel_reference_0001)
 
-# dorie mass conservation
-configure_file(mass_conservation.mini.in ${CMAKE_CURRENT_SOURCE_DIR}/mass_conservation.mini)
-dune_add_system_test(
-	SOURCE test-mass-conservation.cc
-	BASENAME mass-conservation
-	CREATED_TARGETS test-mass-conservation
-	INIFILE mass_conservation.mini)
-dune_target_link_libraries(${test-mass-conservation} ${DUNE_LIBS})
+set_tests_properties(dorie_parallel_reference_0000 PROPERTIES FIXTURES_SETUP dorie_par)
+set_tests_properties(dorie_parallel_reference_0001 PROPERTIES FIXTURES_SETUP dorie_par)
+set_tests_properties(dorie_parallel_reference_compare_0000 PROPERTIES FIXTURES_REQUIRED dorie_par)
+set_tests_properties(dorie_parallel_reference_compare_0001 PROPERTIES FIXTURES_REQUIRED dorie_par)
+set_tests_properties(dorie_parallel_reference_compare_0002 PROPERTIES FIXTURES_REQUIRED dorie_par)
+set_tests_properties(dorie_parallel_reference_compare_0003 PROPERTIES FIXTURES_REQUIRED dorie_par)
+
+add_custom_target(test_run_parallel
+	COMMAND ctest --output-on-failure --tests-regex ^dorie_parallel_.+$
+)
 
-# dorie pfg
+# dorie exec tests
 dorie_add_system_test(dorie-rfg parfield.mini)
-dorie_add_system_test(dorie-rfg parfield_muphi.mini)
-dorie_add_system_test(dorie-rfg correlation.mini)
-dorie_add_system_test(dorie-rfg correlation_parallel.mini)
 
-# dorie plot
+dorie_add_system_test(dorie run.mini)
+set_tests_properties(dorie-rfg_exec_0000 PROPERTIES FIXTURES_SETUP dorie_run)
+set_tests_properties(dorie_exec_run PROPERTIES FIXTURES_REQUIRED dorie_run)
+
 dorie_add_system_test(dorie plot.mini)
-dorie_add_system_test_dependency(dorie_plot dorie_reference_2d_0000)
+dorie_add_system_test_dependency(dorie_exec_plot dorie_exec_run)
+set_tests_properties(dorie_exec_run PROPERTIES FIXTURES_SETUP dorie_plot)
+set_tests_properties(dorie_exec_plot PROPERTIES FIXTURES_REQUIRED dorie_plot)
 
-# dorie create
 dorie_add_system_test(dorie create.mini)
 
+add_custom_target(test_dorie_exec
+	COMMAND ctest --output-on-failure --tests-regex ^.+_exec.+$
+)
+
+# dorie mass conservation
+configure_file(mass_conservation.mini.in ${CMAKE_CURRENT_SOURCE_DIR}/mass_conservation.mini)
+dune_add_system_test(
+	SOURCE test-mass-conservation.cc
+	BASENAME dorie_mass_conservation
+	CREATED_TARGETS mc_target
+	INIFILE mass_conservation.mini
+)
+message(STATUS "target called ${mc_target}")
+dune_target_link_libraries(${mc_target} ${DUNE_LIBS})
+
+add_custom_target(test_mass_conservation
+	COMMAND ctest --output-on-failure --tests-regex ^dorie_mass_conservation_.+$
+)
+
 # dune excludes test targets from 'make all'; undo that here where applicable
 set_property(TARGET dorie PROPERTY EXCLUDE_FROM_ALL 0)
 set_property(TARGET dorie-rfg PROPERTY EXCLUDE_FROM_ALL 0)
\ No newline at end of file

testing/bcs/infiltration_2d.dat

-# BC DATA FILE 2D - Author: L. Riedel - 2015-08-27
-#
-# Specify intersection coordinates of segments. First, state the number n of coordinates you will place.
-# Beginning and end of borders will be added automatically. Thus, every side will have n+1 segments.
-# State "-1" to apply a Neumann boundary of flux j=0 to one entire border ("No flow boundary").
-# For No Flow Boundaries no BCs have to be stated.
-# 3 Segments: 0: 0.0 <-> 0.4 ; 1: 0.4 <-> 0.8 ; 2: 0.8 <-> width
 spatial_resolution_north 0
-# 1 Segment: 0: 0.0 <-> width
 spatial_resolution_south 0
-# 1 Segment with no flow BC: 0: 0.0 <-> height
 spatial_resolution_west -1
 spatial_resolution_east -1
-# number of times at which BCs are defined.
 number_BC_change_times 1
-# Definition of BCs. Order of boundaries as above. Boundary numeration runs along respective standard basis vector.
-# If you want the BC type to change and you have set "boundary.interpolateBCvalues = true", you will have to state the same time stamp twice and change BC type in between. 
-0 neumann -3e-6 dirichlet 0
+0 neumann -5.55e-6 dirichlet 0
\ No newline at end of file

testing/correlation.mini.in

-include ${CMAKE_BINARY_DIR}/doc/default_files/parfield.ini
-
-__name = correlation
-_test_command = pfg
-_asset_path = "${CMAKE_CURRENT_LIST_DIR}"
-_evaluation = correlation
-
-[_correlation]
-reltol = 0.2
-
-[general]
-generator = fft
-overwrite = true
-
-[generator]
-dimensions = 2, 3 | expand dim
-extensions = 1 1, 1 1 1 | expand dim
-
-[generator.fft]
-outputPath = fft_fields | unique
-N = 2048 2048, 128 128 128 | expand dim
-variance = 0.2
-correlationLengths = .004 .005, .05 .06 .08 | expand dim

testing/correlation_parallel.mini.in

-include ${CMAKE_BINARY_DIR}/doc/default_files/parfield.ini
-
-__name = correlation_parallel
-_test_command = pfg
-_test_command_options = --parallel 2 -m=--allow-run-as-root
-_asset_path = "${CMAKE_CURRENT_LIST_DIR}"
-_data_path = {_asset_path}/parfield-data
-_evaluation = correlation
-
-[_correlation]
-reltol = 0.2
-
-[general]
-generator = fft
-overwrite = true
-
-[generator]
-dimensions = 2, 3 | expand dim
-extensions = 1 1, 1 1 1 | expand dim
-
-[generator.fft]
-outputPath = correlation_parallel | unique
-N = 2048 2048, 128 128 128 | expand dim
-variance = 0.2
-correlationLengths = .004 .005, .05 .06 .08 | expand dim

testing/create.mini.in

-__name = create
+__name = exec_create
 _test_command = create
 _test_command_options = -f
 _test_target = None

testing/muphi.mini.in

 include ${CMAKE_BINARY_DIR}/doc/default_files/config.ini
 
-__name = muphi
+__name = ref_muphi
 _test_command = run
 _asset_path = "${CMAKE_CURRENT_LIST_DIR}"
 _evaluation = muphi
 _reference.path = {_asset_path}/references/muphi/
+_reference.meantol = 5E-3
 
 output.fileName = muphi | unique name
 output.outputPath = muphi | unique name

testing/ode_evaporation.mini.in

-include ${CMAKE_BINARY_DIR}/doc/default_files/config.ini
-
-__name = ode_evaporation
-_test_command = run
-_asset_path = "${CMAKE_CURRENT_LIST_DIR}"
-_evaluation = ode
-
-output.fileName = ode_evaporation | unique
-output.outputPath = ode_evaporation | unique
-output.verbose = 0
-
-time.end = 1E7
-time.maxTimestep = 1E7
-time.startTimestep = 1E4
-
-grid.gridType = rectangular, gmsh | expand gridtype
-grid.cells = 1 100
-grid.initialLevel = 3
-grid.gridFile = "{_asset_path}/meshes/square.msh"
-
-boundary.file = "{_asset_path}/bcs/evaporation_2d.dat"
-
-parameters.arrayFile = "{_asset_path}/parfields/sand.h5", "{_asset_path}/parfields/silt.h5" | expand distribution
-
-[_ode]
-flux = 2e-7
-head_abstol = 1E-5, 1E-4 | expand gridtype
-flux_abstol = 1E-9, 4E-9 | expand gridtype
-
-[NewtonParameters]
-AbsoluteLimit = 1E-8
-Reduction = 1E-8

testing/ode_homogeneous_2.mini.in

-include ${CMAKE_BINARY_DIR}/doc/default_files/config.ini
-
-__name = ode_homogeneous_2
-_test_command = run
-_asset_path = "${CMAKE_CURRENT_LIST_DIR}"
-_evaluation = ode
-
-output.fileName = ode_homogeneous_2 | unique
-output.outputPath = ode_homogeneous_2 | unique
-output.verbose = 0
-
-boundary.file = "{_asset_path}/bcs/infiltration_2d.dat"
-
-parameters.arrayFile = "{_asset_path}/parfields/sand.h5"
-
-time.end = 1E7
-time.maxTimestep = 1E7
-time.startTimestep = 1E4
-
-grid.FEorder = 2
-grid.gridType = rectangular
-grid.initialLevel = 0
-grid.cells = 1 5, 1 40 | expand prec
-
-[_ode]
-flux = -3e-6
-head_abstol = 7E-5, 3E-8 | expand prec
-flux_abstol = 6E-8, 9E-10 | expand prec
-
-[NewtonParameters]
-AbsoluteLimit = 1E-10
-Reduction = 1E-10
\ No newline at end of file

testing/ode_homogeneous_3.mini.in

-include ${CMAKE_BINARY_DIR}/doc/default_files/config.ini
-
-__name = ode_homogeneous_3
-_test_command = run
-_asset_path = "${CMAKE_CURRENT_LIST_DIR}"
-_evaluation = ode
-
-output.fileName = ode_homogeneous_3 | unique
-output.outputPath = ode_homogeneous_3 | unique
-output.verbose = 0
-
-boundary.file = "{_asset_path}/bcs/infiltration_2d.dat"
-
-parameters.arrayFile = "{_asset_path}/parfields/sand.h5"
-
-time.end = 1E7
-time.maxTimestep = 1E7
-time.startTimestep = 1E4
-
-grid.FEorder = 3
-grid.gridType = rectangular
-grid.initialLevel = 0
-grid.cells = 1 5, 1 40 | expand prec
-
-[_ode]
-flux = -3e-6
-head_abstol = 2E-5, 2E-8 | expand prec
-flux_abstol = 7E-10, 3E-13 | expand prec
-
-[NewtonParameters]
-AbsoluteLimit = 1E-10
-Reduction = 1E-10
\ No newline at end of file

testing/ode_homogeneous_1.mini.in → testing/ode_homogeneous_sand.mini.in

 include ${CMAKE_BINARY_DIR}/doc/default_files/config.ini
 
-__name = ode_homogeneous_1
+__name = ode_homogeneous_sand
 _test_command = run
 _asset_path = "${CMAKE_CURRENT_LIST_DIR}"
 _evaluation = ode
 
-output.fileName = ode_homogeneous_1 | unique
-output.outputPath = ode_homogeneous_1 | unique
+output.fileName = ode_homogeneous_sand | unique
+output.outputPath = ode_homogeneous_sand | unique
 output.verbose = 0
 
 boundary.file = "{_asset_path}/bcs/infiltration_2d.dat"
@@ -19,16 +19,19 @@ time.startTimestep = 1E4
 
 adaptivity.useAdaptivity = false
 
-grid.FEorder = 1
+grid.FEorder = 1, 2, 3 | expand prec
 grid.gridType = rectangular
 grid.initialLevel = 0
-grid.cells = 1 10, 1 640 | expand prec
+grid.cells = 1 160, 1 40, 1 20 | expand prec
 
 [_ode]
-flux = -3e-6
-head_abstol = 6E-4, 2E-7 | expand prec
-flux_abstol = 2E-8, 3E-12 | expand prec
+flux = -5.55e-6
+head_abstol = 3E-6, 2E-8, 6E-8 | expand prec
+flux_abstol = 5E-11, 1E-9, 3E-12 | expand prec
 
 [NewtonParameters]
 AbsoluteLimit = 1E-10
-Reduction = 1E-10
\ No newline at end of file
+Reduction = 1E-10
+
+[dg]
+penaltyFactor = 10
\ No newline at end of file

testing/ode_heterogeneous_3.mini.in → testing/ode_homogeneous_silt.mini.in

 include ${CMAKE_BINARY_DIR}/doc/default_files/config.ini
 
-__name = ode_heterogeneous_3
+__name = ode_homogeneous_silt
 _test_command = run
 _asset_path = "${CMAKE_CURRENT_LIST_DIR}"
 _evaluation = ode
 
-output.fileName = ode_homogeneous_3 | unique
-output.outputPath = ode_homogeneous_3 | unique
+output.fileName = ode_homogeneous_silt | unique
+output.outputPath = ode_homogeneous_silt | unique
 output.verbose = 0
 
 boundary.file = "{_asset_path}/bcs/infiltration_2d.dat"
 
-parameters.arrayFile = "{_asset_path}/parfields/layered.h5"
+parameters.arrayFile = "{_asset_path}/parfields/silt.h5"
 
 time.end = 1E7
 time.maxTimestep = 1E7
@@ -19,16 +19,19 @@ time.startTimestep = 1E4
 
 adaptivity.useAdaptivity = false
 
-grid.FEorder = 3
+grid.FEorder = 1, 2, 3 | expand prec
 grid.gridType = rectangular
 grid.initialLevel = 0
-grid.cells = 1 10, 1 160 | expand prec
+grid.cells = 1 160, 1 40, 1 20 | expand prec
 
 [_ode]
-flux = -3e-6
-head_abstol = 3E-4, 2E-5 | expand prec
-flux_abstol = 2E-8, 4E-9 | expand prec
+flux = -5.55e-6
+head_abstol = 6E-6, 4E-6, 9E-6 | expand prec
+flux_abstol = 2E-9, 2E-8, 3E-9 | expand prec
 
 [NewtonParameters]
 AbsoluteLimit = 1E-10
-Reduction = 1E-10
\ No newline at end of file
+Reduction = 1E-10
+
+[dg]
+penaltyFactor = 10
\ No newline at end of file

testing/ode_heterogeneous_2.mini.in → testing/ode_layered.mini.in

 include ${CMAKE_BINARY_DIR}/doc/default_files/config.ini
 
-__name = ode_heterogeneous_2
+__name = ode_layered
 _test_command = run
 _asset_path = "${CMAKE_CURRENT_LIST_DIR}"
 _evaluation = ode
 
-output.fileName = ode_homogeneous_2 | unique
-output.outputPath = ode_homogeneous_2 | unique
+output.fileName = ode_layered | unique
+output.outputPath = ode_layered | unique
 output.verbose = 0
 
 boundary.file = "{_asset_path}/bcs/infiltration_2d.dat"
@@ -19,16 +19,19 @@ time.startTimestep = 1E4
 
 adaptivity.useAdaptivity = false
 
-grid.FEorder = 2
+grid.FEorder = 1, 2, 3 | expand prec
 grid.gridType = rectangular
 grid.initialLevel = 0
-grid.cells = 1 10, 1 320 | expand prec
+grid.cells = 1 160, 1 40, 1 20 | expand prec
 
 [_ode]
-flux = -3e-6
-head_abstol = 6E-4, 2E-5 | expand prec
-flux_abstol = 4E-8, 4E-9 | expand prec
+flux = -5.55e-6
+head_abstol = 3E-5, 4E-8, 4E-6 | expand prec
+flux_abstol = 5E-10, 4E-9, 5E-11 | expand prec
 
 [NewtonParameters]
 AbsoluteLimit = 1E-10
-Reduction = 1E-10
\ No newline at end of file
+Reduction = 1E-10
+
+[dg]
+penaltyFactor = 10
\ No newline at end of file

testing/ode_linear_interpolator.mini.in

@@ -13,11 +13,15 @@ time.end = 1E7
 time.maxTimestep = 1E7
 time.startTimestep = 1E4
 
-adaptivity.threshold = 1E-9
 adaptivity.useAdaptivity = false, true | expand gridtype
+adaptivity.markingStrategy = threshold
+adaptivity.refinementFraction = 1E-8
+adaptivity.coarseningFraction = 1E-9
+adaptivity.threshold = 5E-8
+
 grid.gridType = rectangular, gmsh | expand gridtype
 grid.cells = 1 100
-grid.initialLevel = 2, 0 | expand gridtype
+grid.initialLevel = 0
 grid.gridFile = "{_asset_path}/meshes/square.msh"
 
 boundary.file = "{_asset_path}/bcs/infiltration_2d.dat"
@@ -26,10 +30,10 @@ parameters.arrayFile = "{_asset_path}/parfields/corners.h5"
 parameters.interpolation = linear
 
 [_ode]
-flux = -3e-6
-head_abstol = 1E-5, 5E-4 | expand gridtype
-flux_abstol = 1E-8, 2E-7 | expand gridtype
+flux = -5.55e-6
+head_abstol = 3E-5, 2E-4 | expand gridtype
+flux_abstol = 2E-9, 7E-8 | expand gridtype
 
 [NewtonParameters]
-AbsoluteLimit = 1E-8
-Reduction = 1E-8
+AbsoluteLimit = 1E-10
+Reduction = 1E-10

testing/parfield.mini.in

 include ${CMAKE_BINARY_DIR}/doc/default_files/parfield.ini
 
-__name = pfg
+__name = exec
 _test_command = pfg