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Revert "Merge branch 'hotfix-sphinx-version' into 'master'"

See merge request !152

This reverts merge request !148

Use VTKReader as dictionary

See merge request !150

Resolve "Add parameterization for the effective hydrodynamic dispersion tensor"

Closes #142

See merge request !141

Merge branch '142-add-parameterization-for-the-effective-hydrodynamic-dispersion-tensor' of ssh://ts-gitlab.iup.uni-heidelberg.de:10022/dorie/dorie into 142-add-parameterization-for-the-effective-hydrodynamic-dispersion-tensor

Increase contents tree depth.

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* This allows sphinix to create an index which is easier to navegate

* Use regular math for scalars, bold for vectors, sans-serif for
  tensors.
* Replace superscripts by subscripts.
* Replace `\mathrm` by `\text`.
* Fix typos.

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Previous parameter name shadowed a typedef inside the factory class.
This update should reduce confusion.

This increases readability.

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System tests previously only excluded the unit tests, which lead to the
Python tests being executed for 'make system_tests'.

Add __init__ to pytest directory to enable package-local includes.

This enables convenient iteration over all data arrays in a VTK file,
even without their names given. These can now be retrieved from the
reader directly.

* Make VTKReader a mapping: Use it like dict to access data arrays.
* Wrap data arrays into VTKDataArray for evaluation.

* Remove `Type`to structs of parameters and add `Param` to those parameterizations which clash with parameters structs

* Add notes on sequence and component notation of tensors, combine
  both in YAML templates.
* Add paragraphs for simple and superposed transport parameterizations.
* Fix indentations and trailing whitespace.
* Add contents directive.

Allow failure of 'prep' builds

See merge request !149

Updates to the dune-randomfield master branch made it incompatible with
the current version of DORiE. Allow the 'prep' stage to fail until there
is a resolution found.

Merge branch '149-dorie-installation-on-mac-homebrew-does-not-support-with-mpi-any-more-2' into 'master'

Resolve "DORiE installation on Mac (homebrew does not support --with-mpi any more)"

Closes #149

See merge request !147

* Define a custom target for HDF5.
  - Link to dependent libraries.
  - Add CPP definition for parallel setup explicitly.
  - Remove runtime check for parallel HDF5 in 'dorie-rfg'.
* Set CMP0074 to NEW to allow usage of <Package>_ROOT variables.
* Link all dependencies to executables when calling DorieTesting
  CMake macros.
* Do not check for FFTW3.
  - Check is performed by dune-randomfield already, which also
    registers the lib to DUNE_LIBS.
  - Remove FindFFTW3.cmake.
* Raise minimum required CMake version to Ubuntu Bionic, v3.10.
* Use lowercase name `muparser` consistently.
* Update installation instructions for building HDF5 from source
  (MPI support dropped by Homebrew)
* Use `dune_target_link_libraries` for DUNE_LIBS only.

Require Sphinx <2.0 for Breathe compatibility

See merge request !148