Issues · dorie / dorie

New issue

Add yaml-cpp as dependency

#89 · created Aug 11, 2018 by Lukas Riedel v2.0 Release
- CLOSED
- 1
- 0
updated Oct 25, 2018
Split AdaptivityHandler::adapt_grid() method into two parts: mark_grid and adapt_grid

#90 · created Aug 15, 2018 by Santiago Ospina De Los Ríos Solute Transport Feature Discussion Enhancement
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- 2
- 2
updated Sep 13, 2018
Bug in the `RectangularGrid::getBCtime()` method.

#91 · created Aug 16, 2018 by Santiago Ospina De Los Ríos Bug
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- 1
- 1
updated Sep 03, 2018
Add coverage to DORiE

#93 · created Aug 20, 2018 by Santiago Ospina De Los Ríos Enhancement Suggestion
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- 2
- 15
updated Sep 04, 2018
Base class for simulations

#94 · created Aug 20, 2018 by Santiago Ospina De Los Ríos Solute Transport Feature Discussion Enhancement
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- 1
- 22
updated Sep 13, 2018
Modify RichardsSimulation to have the base class #94.

#95 · created Aug 21, 2018 by Santiago Ospina De Los Ríos
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- 1
- 0
updated Sep 13, 2018
Bugfix release for v1.1 4 of 4 tasks completed

#96 · created Aug 21, 2018 by Lukas Riedel
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- 0
updated Aug 29, 2018
Add a GridWrapper for managing grid data

#97 · created Aug 23, 2018 by Lukas Riedel Discussion
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- 4
updated Oct 07, 2018
Implement a simulation object for transport: TransportSimulation.

#98 · created Aug 24, 2018 by Santiago Ospina De Los Ríos Solute Transport Feature Doing Enhancement
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- 1
- 0
updated Oct 22, 2018
Build unit tests in separate pipeline job

#99 · created Aug 24, 2018 by Lukas Riedel Enhancement Suggestion
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- 1
- 1
- 6
updated Sep 04, 2018
Couple the TransportSimulation with a simple ODE solver for richards equation.

#100 · created Aug 24, 2018 by Santiago Ospina De Los Ríos Solute Transport Feature
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- 1
- 1
updated Oct 22, 2018
Couple the TransportSimulation with RichardsSimulation

#101 · created Aug 26, 2018 by Santiago Ospina De Los Ríos Solute Transport Feature Doing Enhancement Model:Richards Model:Transport
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- 1
- 3
updated Feb 06, 2019
GradientFluxAdapter problem

#62 · created Apr 20, 2018 by Santiago Ospina De Los Ríos Solute Transport Feature Bug Discussion Doing
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- 1
- 4
updated Jan 15, 2019
Add DG local operator to the SimulationTransport class

#111 · created Oct 05, 2018 by Santiago Ospina De Los Ríos Solute Transport Feature Doing Model:Transport Release
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- 1
- 0
updated Jan 27, 2020
Solution Container

#70 · created Jun 13, 2018 by Santiago Ospina De Los Ríos Solute Transport Feature Discussion Doing Enhancement Model:Common
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- 1
- 6
updated Jan 08, 2019
Allow multiple models in one inifile 3 of 4 tasks completed

#107 · created Sep 06, 2018 by Santiago Ospina De Los Ríos Solute Transport Feature Discussion Doing
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- 1
- 11
updated Oct 10, 2018
[meta] Revamp Python scripts and packages 2 of 2 tasks completed

#103 · created Aug 29, 2018 by Lukas Riedel Meta
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- 0
updated Sep 24, 2018
Re-bundle Python packages

#104 · created Sep 04, 2018 by Lukas Riedel 1h 30m
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- 1
- 1
updated Sep 06, 2018
Allow mini files in unit tests

#105 · created Sep 05, 2018 by Santiago Ospina De Los Ríos Bug
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- 1
- 1
updated Sep 06, 2018
Move 'dorie' script into Python package

#106 · created Sep 06, 2018 by Lukas Riedel
- CLOSED
- 1
- 0
updated Sep 10, 2018
vonNeumann -> Neumann in boundary condition enum

#116 · created Oct 19, 2018 by Dominic Kempf Low Priority
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- 1
- 1
- 1
updated Oct 22, 2018
use DGPk instead of OPB finite elements

#117 · created Oct 24, 2018 by Santiago Ospina De Los Ríos Enhancement Low Priority Model:Common To Do
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- 1
- 1
updated Jan 29, 2019
use SubGrid to be able to have diferent grid views in each model

#118 · created Oct 24, 2018 by Santiago Ospina De Los Ríos Enhancement Low Priority Model:Common Suggestion To Do
- 2
updated Jul 11, 2019
[meta] Revamp boundary condition input and handling 5 of 5 tasks completed

#119 · created Oct 26, 2018 by Lukas Riedel v2.0 Release Doing Enhancement Meta Suggestion
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- 1
updated Sep 25, 2019
Increase encapsulation of TimeController

#128 · created Nov 29, 2018 by Lukas Riedel v2.0 Release Doing Enhancement Model:Common
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- 1
- 1
- 1
updated Sep 10, 2019
Neumman BC only applies in the gravity direction

#136 · created Jan 07, 2019 by Santiago Ospina De Los Ríos Discussion Doing Model:Richards
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- 1
- 6
updated Sep 24, 2019
Use a unit test framework

#152 · created May 06, 2019 by Lukas Riedel v2.0 Release Discussion Suggestion
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- 1
- 3
updated Jul 04, 2019
Automatically scale input scaling fields to global grid size 0 of 1 task completed

#120 · created Oct 26, 2018 by Lukas Riedel Enhancement
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- 1
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updated Jan 14, 2019
Add linear interpolator and use it for scaling fields

#121 · created Oct 26, 2018 by Lukas Riedel Suggestion
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- 1
- 0
updated Apr 25, 2019
[meta] Support creating initial condition 3 of 3 tasks completed

#122 · created Oct 26, 2018 by Lukas Riedel Discussion Enhancement Meta Model:Common Suggestion
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- 18
updated May 17, 2019
Add input of boundary segmentation

#123 · created Oct 30, 2018 by Lukas Riedel v2.0 Release Suggestion
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- 1
- 0
updated Nov 06, 2018
Remove boundary conditions "evaporation" and "limitedInflux"

#124 · created Nov 06, 2018 by Lukas Riedel v2.0 Release Enhancement
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- 1
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updated Nov 06, 2018
New data structure for storing boundary conditions

#125 · created Nov 06, 2018 by Lukas Riedel v2.0 Release Model:Common Suggestion
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- 1
- 1
updated Sep 24, 2019
New input for boundary condition data

#126 · created Nov 06, 2018 by Lukas Riedel v2.0 Release Model:Common Public API Suggestion
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- 1
- 0
updated Sep 24, 2019
Add data assimilation interface to RichardsSimulation

#127 · created Nov 28, 2018 by Lukas Riedel Doing Model:Richards Suggestion
- 1
- 2
updated May 17, 2019
Default vertexData = true

#129 · created Dec 12, 2018 by Santiago Ospina De Los Ríos v2.0 Release Discussion Model:Richards Model:Transport Suggestion To Do
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- 1
- 0
updated Dec 18, 2018
Switch to vertex data evaluation on system tests 0 of 1 task completed

#130 · created Dec 18, 2018 by Santiago Ospina De Los Ríos Enhancement Low Priority Model:Richards To Do
- 0
updated Sep 09, 2019
Implement an abstract base class for initial conditions

#131 · created Dec 28, 2018 by Santiago Ospina De Los Ríos Doing Enhancement Model:Common
- CLOSED
- 1
- 5
updated Jan 14, 2019
Implement a class for initial conditions from HDF5 data

#133 · created Dec 29, 2018 by Santiago Ospina De Los Ríos Doing Enhancement Model:Common
- CLOSED
- 1
- 12
updated Feb 18, 2019
Implement a class for initial conditions from analytic functions

#134 · created Dec 29, 2018 by Santiago Ospina De Los Ríos Discussion Doing Enhancement Model:Common
- CLOSED
- 1
- 3
updated Jan 31, 2019
Support for Marvin's numerical experiments 8 of 11 tasks completed

#135 · created Jan 01, 2019 by Santiago Ospina De Los Ríos Model:Transport Support
- CLOSED
- 1
- 7
updated May 18, 2019
Add a Finite Volume local operator for the Richards equation

#137 · created Jan 07, 2019 by Santiago Ospina De Los Ríos Discussion Enhancement Model:Richards
- CLOSED
- 1
- 0
updated May 08, 2019
Allow flux reconstruction for non-conforming grids 0 of 1 task completed

#138 · created Jan 09, 2019 by Santiago Ospina De Los Ríos Low Priority Model:Common Model:Richards To Do
- 0
updated Jan 09, 2019
Flux reconstruction yields large error on 3D simplices and 2nd order polynomials (only) 0 of 1 task completed

#139 · created Jan 14, 2019 by Lukas Riedel Bug Model:Common Upstream
- 1
- 2
updated Oct 12, 2020
Add muparser to the installation guide

#141 · created Feb 01, 2019 by Santiago Ospina De Los Ríos Bug Support
- CLOSED
- 1
- 1
- 1
updated Feb 01, 2019
Add parameterization for the effective hydrodynamic dispersion tensor

#142 · created Feb 05, 2019 by Santiago Ospina De Los Ríos Solute Transport Feature Enhancement Model:Transport Public API
- CLOSED
- 1
- 1
- 27
updated Apr 23, 2019
Switch to "Read the Docs" for automated documentation building and hosting

#143 · created Feb 11, 2019 by Lukas Riedel Documentation Suggestion
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- 1
- 1
updated Jun 30, 2019
Time in log output does not match with local time

#144 · created Feb 13, 2019 by Marvin Lasetzki FAQ Model:Common Public API
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- 7
updated May 17, 2019
Install 'ssh' into Docker image 1 of 1 task completed

#146 · created Feb 18, 2019 by Lukas Riedel Bug Support
- CLOSED
- 4
updated Nov 28, 2019
Water flux error estimator must include Neumann boundary condition

#147 · created Feb 26, 2019 by Lukas Riedel v2.0 Release Bug Model:Richards
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- 1
- 1
updated Feb 13, 2020
Set water content as initial condition

#148 · created Mar 01, 2019 by Lukas Riedel Model:Richards Suggestion
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- 1
- 1
- 2
updated Apr 27, 2020
DORiE installation on Mac (homebrew does not support --with-mpi any more)

#149 · created Mar 18, 2019 by Hannes Bauser Support
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- 2
- 11
updated Apr 05, 2019
DORiE installation not working with newest dune-randomfield master

#150 · created Apr 04, 2019 by Hannes Bauser Critical Support Upstream
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- 2
- 1
- 3
updated Apr 25, 2019
"dirichletMode" parameter is never evaluated

#151 · created Apr 30, 2019 by Lukas Riedel Bug Model:Transport
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- 1
- 2
updated Sep 24, 2019
Add upwinding option to Richards FV solver

#153 · created May 08, 2019 by Lukas Riedel Model:Richards Suggestion
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- 1
- 1
updated Aug 12, 2019
Linear interpolator only works for minimal shapes and trivial extensions

#154 · created May 14, 2019 by Lukas Riedel Bug Critical
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- 1
- 0
updated May 16, 2019
Flux reconstruction does not deep-copy the local operator

#157 · created Jun 01, 2019 by Lukas Riedel Bug Model:Richards Model:Transport
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- 3
updated Jun 01, 2019
Use simple doc server to deploy DORiE docs 5 of 5 tasks completed

#158 · created Jun 30, 2019 by Lukas Riedel v2.0 Release Documentation Suggestion
- CLOSED
- 1
- 1
- 1
updated Sep 08, 2019
Follow-up from "Resolve "Add upwinding option to Richards FV solver"" 0 of 1 task completed

#159 · created Aug 09, 2019 by Lukas Riedel Bug Critical Model:Richards
- CLOSED
- 1
- 0
updated Aug 12, 2019
Transport FV local operator assertions fail

#160 · created Aug 27, 2019 by Lukas Riedel Bug Model:Transport
- CLOSED
- 1
- 2
updated Sep 10, 2019
Tests are not being configured correctly

#161 · created Sep 08, 2019 by Santiago Ospina De Los Ríos v2.0 Release Bug Critical Upstream
- CLOSED
- 1
- 6
updated Sep 09, 2019
Target 'dorie' excluded from 'all' target

#162 · created Sep 10, 2019 by Lukas Riedel Bug Critical Docker
- CLOSED
- 1
- 0
updated Sep 13, 2019
Add CMake option to enable coverage on unit tests

#163 · created Sep 13, 2019 by Santiago Ospina De Los Ríos
- CLOSED
- 1
- 0
updated Oct 21, 2019
[meta] Improve documentation of config file 3 of 3 tasks completed

#164 · created Oct 04, 2019 by Lukas Riedel v2.0 Release Documentation Meta
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- 1
- 1
updated Jan 09, 2020
Reformat config file parameter docs into list/objects

#165 · created Oct 04, 2019 by Lukas Riedel v2.0 Release Documentation
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- 1
- 0
updated Oct 19, 2019
Support XML tags specifying version changes of config file parameters

#166 · created Oct 04, 2019 by Lukas Riedel v2.0 Release Documentation
- CLOSED
- 1
- 0
updated Oct 21, 2019
Add XML version tags to config file parameter docs

#167 · created Oct 07, 2019 by Lukas Riedel v2.0 Release Documentation
- CLOSED
- 1
- 0
updated Dec 18, 2019
Improve multiprocessing support for Docker image

#168 · created Nov 21, 2019 by Lukas Riedel Docker Support
- 0
updated Jan 27, 2020
Use BCGS_AMG_SSOR solver for finite volume methods

#169 · created Nov 25, 2019 by Lukas Riedel Enhancement Suggestion
- CLOSED
- 1
- 0
updated Jul 01, 2020
Make CFL condition the upper limit for time steps in explicit transport solver

#170 · created Dec 17, 2019 by Lukas Riedel Bug Critical Model:Transport
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- 1
- 3
updated Dec 20, 2019
Negative solute concentrations when pulses pass through soil layer interfaces

#171 · created Dec 17, 2019 by Lukas Riedel Discussion Model:Transport
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- 1
- 13
updated Jan 10, 2020
CFL condition is based on water flux

#172 · created Dec 17, 2019 by Lukas Riedel Bug Model:Transport
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- 1
- 3
updated Dec 20, 2019
Follow-up from "Resolve "Add steady state as initial condition""

#173 · created Dec 20, 2019 by Lukas Riedel Enhancement Low Priority
- CLOSED
- 1
- 0
updated Jan 07, 2020
Document model solver loop and time step adaptation schemes in user manual 0 of 1 task completed

#174 · created Jan 09, 2020 by Lukas Riedel v2.0 Release Documentation Suggestion
- CLOSED
- 1
- 0
updated Apr 07, 2020
Introduce Model::pre_step() method to set boundary condition times independently from step computation

#175 · created Jan 09, 2020 by Lukas Riedel Bug Low Priority Model:Common Model:Richards Suggestion
- 0
updated Jan 10, 2020
[meta] Improve default configuration files 3 of 3 tasks completed

#176 · created Jan 14, 2020 by Lukas Riedel v2.0 Release Documentation Enhancement Meta
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- 1
- 0
updated Feb 14, 2020
[meta] Small improvements to the user manual 2 of 2 tasks completed

#177 · created Jan 14, 2020 by Lukas Riedel v2.0 Release Documentation Enhancement Meta
- CLOSED
- 1
updated Feb 26, 2020
Use more recent version of Ubuntu in Docker 0 of 1 task completed

#178 · created Jan 24, 2020 by Santiago Ospina De Los Ríos Docker
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- 1
- 1
- 0
updated Aug 20, 2020
Add cookbook example on how to use the random field generator

#179 · created Jan 27, 2020 by Lukas Riedel v2.0 Release Documentation Suggestion
- CLOSED
- 1
- 0
updated Feb 26, 2020
Homogeneize formatting in the C++ code

#180 · created Feb 14, 2020 by Santiago Ospina De Los Ríos Discussion
- CLOSED
- 2
- 6
updated Jul 20, 2020
Include growing plant roots as a sink in the Richards source-term function

#181 · created Feb 26, 2020 by Simon Lüdke Model:Richards
- 13
updated Oct 01, 2020
Add Outflow boundary condition for Richards model

#182 · created Mar 24, 2020 by Lukas Riedel Model:Richards Suggestion
- CLOSED
- 1
- 0
updated Jun 17, 2020
Update contribution guide

#183 · created Apr 03, 2020 by Lukas Riedel v2.0 Release Release Support
- CLOSED
- 1
- 0
updated Apr 06, 2020
Upgrade spdlog submodule to v.1.5.0

#184 · created Apr 03, 2020 by Lukas Riedel Upstream
- CLOSED
- 1
- 1
updated Apr 06, 2020
Use runner tags to reflect different runner categories

#185 · created Apr 03, 2020 by Lukas Riedel Support
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- 1
- 0
updated Apr 06, 2020
Sphinx v3.0 incompatible to Breathe plugin

#186 · created Apr 06, 2020 by Lukas Riedel Critical Support Upstream
- CLOSED
- 1
- 0
updated Apr 06, 2020
Time step restriction by boundary conditions differs between processors

#187 · created Apr 17, 2020 by Lukas Riedel Bug Critical Model:Common
- CLOSED
- 1
- 0
updated Apr 29, 2020
Avoid dangling references in lambdas returned by parameterization interface 0 of 1 task completed

#188 · created Apr 27, 2020 by Lukas Riedel Bug Low Priority Model:Richards Model:Transport
- 2
updated Apr 27, 2020
Release: 2.0.0 14 of 14 tasks completed

#189 · created Apr 29, 2020 by Lukas Riedel v2.0 Release May 10, 2020 Doing Release
- CLOSED
- 8
updated May 25, 2020
Refactor CHANGELOG.md before v2.0 release

#190 · created May 04, 2020 by Lukas Riedel v2.0 Release Release Support
- CLOSED
- 1
- 0
updated May 13, 2020
Remove superfluous folders and files

#191 · created May 07, 2020 by Lukas Riedel v2.0 Release Release
- CLOSED
- 1
- 1
- 0
updated May 13, 2020
VTK incompatible to Python 3.8

#192 · created May 14, 2020 by Lukas Riedel Upstream
- CLOSED
- 1
- 7
updated Jul 03, 2020
setting of [grid]extensions seems to not work with gmsh grids

#193 · created May 25, 2020 by Hannes Bauser Bug Model:Common Model:Richards
- CLOSED
- 1
- 1
updated Aug 11, 2020
add horizontal_projection option to transport Neumann boundary condition

#194 · created Jun 10, 2020 by Hannes Bauser Enhancement Low Priority Model:Transport Suggestion
- 2
- 0
updated Jun 10, 2020
Initial support for spack packaging

#195 · created Jun 15, 2020 by Santiago Ospina De Los Ríos Discussion Enhancement Low Priority Suggestion
- 1
- 8
updated Jul 03, 2020
flux reconstruction and transport issues in simplex grid

#196 · created Jun 17, 2020 by Hannes Bauser Bug Model:Common Upstream
- 1
- 44
updated Apr 07, 2021
Simplify cloning DUNE modules and executing dunecontrol script

#197 · created Jun 18, 2020 by Lukas Riedel JOSS Publication Documentation Pick into 2.0 Suggestion Support
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- 1
- 0
updated Jul 16, 2020
Update C++ standard requirement

#198 · created Jun 23, 2020 by Santiago Ospina De Los Ríos Discussion Documentation
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- 1
- 5
updated Aug 27, 2020
Add CITATION.cff in Citation File Format

#199 · created Jun 29, 2020 by Lukas Riedel JOSS Publication Documentation Release Support
- CLOSED
- 1
- 1
updated Aug 24, 2020
Refactor main Richards and Transport model files

#200 · created Jun 29, 2020 by Lukas Riedel Model:Richards Model:Transport Suggestion
- 5
updated Jul 07, 2020