Commit 996d36ae authored by Santiago Ospina's avatar Santiago Ospina

renamed folder testing to test

parent 2c0f1bc1
__name = exec_create
_test_command = create
_test_command_options = -f
_test_target = None
_evaluation = compare
__refpath = /home/saospina/Codes/DUNE_INSTALL/Debug/dorie/doc/default_files
[_compare]
created_files = 2d_infiltr.bcdat 3d_infiltr.bcdat config.ini parfield.ini
reference_files = {__refpath}/2d_infiltr.bcdat {__refpath}/3d_infiltr.bcdat {__refpath}/config.ini {__refpath}/parfield.ini
include /home/saospina/Codes/DUNE_INSTALL/Debug/dorie/doc/default_files/config.ini
__name = mc
_asset_path = "/home/saospina/Codes/DUNE_SRC/dorie/testing"
_limit_cube_static = 4E-7
_limit_cube_adapt = 4E-7
_limit_simplex_static = 4E-7
_limit_simplex_adapt = 4E-7
_prefix = _simplex, _cube | expand grid
_suffix = _static, _adapt | expand adaptive
limit = {_limit{_prefix}{_suffix}}
output.fileName = mass_conservation | unique
output.outputPath = mass_conservation | unique
output.verbose = 0
boundary.file = "{_asset_path}/bcs/mass_conservation_2d.dat"
parameters.arrayFile = "{_asset_path}/parfields/sand.h5"
time.end = 1E4
time.maxTimestep = 1E4
time.startTimestep = 1E2
adaptivity.useAdaptivity = false, true | expand adaptive
adaptivity.maxLevel = 3
adaptivity.markingStrategy = threshold
adaptivity.refinementFraction = 5E-9
adaptivity.coarseningFraction = 5E-10
adaptivity.threshold = 0.0
grid.FEorder = 1
grid.gridType = simplex, rectangular | expand grid
grid.initialLevel = 2
grid.cells = 20 20
grid.gridFile = {_asset_path}/meshes/square.msh
include /home/saospina/Codes/DUNE_INSTALL/Debug/dorie/doc/default_files/config.ini
__name = ref_muphi
_test_command = run
_asset_path = "/home/saospina/Codes/DUNE_SRC/dorie/testing"
_evaluation = muphi
_reference.path = {_asset_path}/references/muphi/
_reference.meantol = 5E-3
output.fileName = muphi | unique name
output.outputPath = muphi | unique name
output.verbose = 0
time.end = 1.5E5
time.maxTimestep = 1E5
time.startTimestep = 1E3
adaptivity.useAdaptivity = false
grid.dimensions = 2
grid.initialLevel = 0
grid.gridType = rectangular
grid.cells = 50 200
grid.extensions = 1 1
boundary.file = "{_asset_path}/bcs/muphi2d.dat"
parameters.arrayFile = fft_field_muphi.h5
include /home/saospina/Codes/DUNE_INSTALL/Debug/dorie/doc/default_files/config.ini
__name = ode_homogeneous_sand
_test_command = run
_asset_path = "/home/saospina/Codes/DUNE_SRC/dorie/testing"
_evaluation = ode
output.fileName = ode_homogeneous_sand | unique
output.outputPath = ode_homogeneous_sand | unique
output.verbose = 0
boundary.file = "{_asset_path}/bcs/infiltration_2d.dat"
parameters.arrayFile = "{_asset_path}/parfields/sand.h5"
time.end = 1E7
time.maxTimestep = 1E7
time.startTimestep = 1E4
adaptivity.useAdaptivity = true
grid.FEorder = 1, 2, 3 | expand prec
grid.gridType = rectangular
grid.initialLevel = 0
grid.cells = 1 160, 1 40, 1 20 | expand prec
[_ode]
flux = -5.55e-6
head_abstol = 3E-6, 2E-8, 6E-8 | expand prec
flux_abstol = 5E-11, 1E-9, 3E-12 | expand prec
[NewtonParameters]
AbsoluteLimit = 1E-10
Reduction = 1E-10
[dg]
penaltyFactor = 10
include /home/saospina/Codes/DUNE_INSTALL/Debug/dorie/doc/default_files/config.ini
__name = ode_homogeneous_silt
_test_command = run
_asset_path = "/home/saospina/Codes/DUNE_SRC/dorie/testing"
_evaluation = ode
output.fileName = ode_homogeneous_silt | unique
output.outputPath = ode_homogeneous_silt | unique
output.verbose = 0
boundary.file = "{_asset_path}/bcs/infiltration_2d.dat"
parameters.arrayFile = "{_asset_path}/parfields/silt.h5"
time.end = 1E7
time.maxTimestep = 1E7
time.startTimestep = 1E4
adaptivity.useAdaptivity = false
grid.FEorder = 1, 2, 3 | expand prec
grid.gridType = rectangular
grid.initialLevel = 0
grid.cells = 1 160, 1 40, 1 20 | expand prec
[_ode]
flux = -5.55e-6
head_abstol = 6E-6, 4E-6, 9E-6 | expand prec
flux_abstol = 2E-9, 2E-8, 3E-9 | expand prec
[NewtonParameters]
AbsoluteLimit = 1E-10
Reduction = 1E-10
[dg]
penaltyFactor = 10
include /home/saospina/Codes/DUNE_INSTALL/Debug/dorie/doc/default_files/config.ini
__name = ode_layered
_test_command = run
_asset_path = "/home/saospina/Codes/DUNE_SRC/dorie/testing"
_evaluation = ode
output.fileName = ode_layered | unique
output.outputPath = ode_layered | unique
output.verbose = 0
boundary.file = "{_asset_path}/bcs/infiltration_2d.dat"
parameters.arrayFile = "{_asset_path}/parfields/layered.h5"
time.end = 1E7
time.maxTimestep = 1E7
time.startTimestep = 1E4
adaptivity.useAdaptivity = false
grid.FEorder = 1, 2, 3 | expand prec
grid.gridType = rectangular
grid.initialLevel = 0
grid.cells = 1 160, 1 40, 1 20 | expand prec
[_ode]
flux = -5.55e-6
head_abstol = 3E-5, 4E-8, 4E-6 | expand prec
flux_abstol = 5E-10, 4E-9, 5E-11 | expand prec
[NewtonParameters]
AbsoluteLimit = 1E-10
Reduction = 1E-10
[dg]
penaltyFactor = 10
include /home/saospina/Codes/DUNE_INSTALL/Debug/dorie/doc/default_files/config.ini
__name = ode_linear_interpolator
_test_command = run
_asset_path = "/home/saospina/Codes/DUNE_SRC/dorie/testing"
_evaluation = ode
output.fileName = ode_linear_interpolator | unique
output.outputPath = ode_linear_interpolator | unique
output.verbose = 0
time.end = 1E7
time.maxTimestep = 1E7
time.startTimestep = 1E4
adaptivity.useAdaptivity = false, true | expand gridtype
adaptivity.markingStrategy = threshold
adaptivity.refinementFraction = 1E-8
adaptivity.coarseningFraction = 1E-9
adaptivity.threshold = 5E-8
grid.gridType = rectangular, gmsh | expand gridtype
grid.cells = 1 100
grid.initialLevel = 0
grid.gridFile = "{_asset_path}/meshes/square.msh"
boundary.file = "{_asset_path}/bcs/infiltration_2d.dat"
parameters.arrayFile = "{_asset_path}/parfields/corners.h5"
parameters.interpolation = linear
[_ode]
flux = -5.55e-6
head_abstol = 3E-5, 9E-5 | expand gridtype
flux_abstol = 2E-9, 5E-8 | expand gridtype
[NewtonParameters]
AbsoluteLimit = 1E-10
Reduction = 1E-10
include /home/saospina/Codes/DUNE_INSTALL/Debug/dorie/doc/default_files/config.ini
__name = parallel_reference
_test_command = run
_asset_path = "/home/saospina/Codes/DUNE_SRC/dorie/testing"
_dimension = 2, 3 | expand dim
output.fileName = parallel_reference_{_dimension}
output.outputPath = parallel_reference_{_dimension}
output.verbose = 0
time.end = 1E5
time.maxTimestep = 1E5
time.startTimestep = 1E3
adaptivity.useAdaptivity = false
grid.dimensions = {_dimension}
grid.initialLevel = 0
grid.gridType = rectangular
grid.cells = 40 40, 12 12 12 | expand dim
grid.extensions = 1 1, 1 1 1 | expand dim
boundary.file = "{_asset_path}/bcs/infiltration_2d.dat", "{_asset_path}/bcs/infiltration_3d.dat" | expand dim
parameters.arrayFile = "{_asset_path}/parfields/fft_2d_miller.h5", "{_asset_path}/parfields/fft_3d_miller.h5" | expand dim
parameters.scale = 1 1, 1 1 1 | expand dim
parameters.offset = 0 0, 0 0 0 | expand dim
include /home/saospina/Codes/DUNE_INSTALL/Debug/dorie/doc/default_files/config.ini
_num_proc = 2, 3 | expand
__name = parallel_reference_compare
_test_command = run
_test_command_options = --parallel {_num_proc} -m=--allow-run-as-root
_asset_path = "/home/saospina/Codes/DUNE_SRC/dorie/testing"
_evaluation = reference
_dimension = 2, 3 | expand dim
_reference.path = "/home/saospina/Codes/DUNE_INSTALL/Debug/dorie/testing/"
_reference.name = parallel_reference_{_dimension}
output.fileName = parallel_reference_compare | unique
output.outputPath = parallel_reference_compare | unique
output.verbose = 0
time.end = 1E5
time.maxTimestep = 1E5
time.startTimestep = 1E3
adaptivity.useAdaptivity = false
grid.dimensions = {_dimension}
grid.initialLevel = 0
grid.gridType = rectangular
grid.cells = 40 40, 12 12 12 | expand dim
grid.extensions = 1 1, 1 1 1 | expand dim
boundary.file = "{_asset_path}/bcs/infiltration_2d.dat", "{_asset_path}/bcs/infiltration_3d.dat" | expand dim
parameters.arrayFile = "{_asset_path}/parfields/fft_2d_miller.h5", "{_asset_path}/parfields/fft_3d_miller.h5" | expand dim
parameters.scale = 1 1, 1 1 1 | expand dim
parameters.offset = 0 0, 0 0 0 | expand dim
include /home/saospina/Codes/DUNE_INSTALL/Debug/dorie/doc/default_files/parfield.ini
__name = exec
_test_command = pfg
_asset_path = "/home/saospina/Codes/DUNE_SRC/dorie/testing"
_data_path = {_asset_path}/parfield-data
_evaluation = reference
[_reference]
path = {_asset_path}/references/parfield
[general]
generator = fft, image, csv, hdf5 | expand input_type
inputFile = UNDEFINED, {_data_path}/test.png, {_data_path}/test.csv, {_data_path}/test.h5 | expand input_type
outputFile = fft.h5, image.h5, csv.h5, h5.h5 | expand input_type
parameterization = vanGenuchten
overwrite = true
[generator]
dimensions = 2, 2, 2, 3 | expand input_type
extensions = 1 1, 1 1, 1 1, 1 1 1 | expand input_type
millerSimilarity = false
[generator.fft]
N = 50 50
newField = true
newEV = true
include /home/saospina/Codes/DUNE_INSTALL/Debug/dorie/doc/default_files/parfield.ini
__name = ref_muphi_pfg
_test_command = pfg
[general]
generator = fft
outputFile = fft_field_muphi.h5
parameterization = vanGenuchten
overwrite = true
# fix some parameters so we make sure they are the same as in the muphi run
[parameters.vanGenuchten.1]
thetaR = 0.03
thetaS = 0.32
alpha = -2.3
tau = -1.1
n = 4.17
k0 = 2.2e-5
[parameters.vanGenuchten.2]
thetaR = 0.01
thetaS = 0.41
alpha = -0.7
tau = 0
n = 1.3
k0 = 1e-5
[generator]
millerSimilarity = false
variance = 0.2
extensions = 1 1
[generator.fft]
N = 1000 1000
correlationLengths = .4 .05
seed = 223141598
beta = 0
embeddingFactor = .01
variogramModel = gaussian
newEV = true
newField = true
__name = exec_plot
_test_command = plot
_test_target = run.pvd
include /home/saospina/Codes/DUNE_INSTALL/Debug/dorie/doc/default_files/config.ini
__name = exec_run
_test_command = run
_asset_path = "/home/saospina/Codes/DUNE_SRC/dorie/testing"
output.fileName = run | unique name
output.outputPath = run | unique name
output.verbose = 0
time.end = 1E4
time.maxTimestep = 1E4
time.startTimestep = 5E2
adaptivity.useAdaptivity = false
grid.dimensions = 2
grid.initialLevel = 0
grid.gridType = rectangular
grid.cells = 20 20
grid.FEorder = 2
grid.extensions = 1 1
boundary.file = "{_asset_path}/bcs/infiltration_2d.dat"
parameters.arrayFile = /home/saospina/Codes/DUNE_INSTALL/Debug/dorie/testing/csv.h5
include /home/saospina/Codes/DUNE_INSTALL/Debug/dorie/doc/default_files/config.ini
__name = run_transport
_test_command = run_transport
_asset_path = "/home/saospina/Codes/DUNE_SRC/dorie/testing"
output.fileName = transport | unique
output.outputPath = transport | unique
output.verbose = 0
boundary.file = "{_asset_path}/bcs/contaminant_2d.dat"
parameters.arrayFile = "{_asset_path}/parfields/sand.h5"
parameters.molecularDifussion = 10., 0.| expand
time.end = 1E7
time.minTimestep = 1
time.maxTimestep = 1E3
time.startTimestep = 1E2
adaptivity.useAdaptivity = true
adaptivity.maxLevel = 3
adaptivity.markingStrategy = threshold
adaptivity.refinementFraction = 5E-9
adaptivity.coarseningFraction = 5E-10
adaptivity.threshold = 0.0
grid.FEorder = 0
grid.gridType = rectangular
grid.initialLevel = 3
grid.cells = 5 5
[_ode]
flux = -5.55e-6
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